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IGVFDS6753PKAH

released
Aliases
buenrostro-bernstein:AnalysisSet_BioSam-4965_SS-PKR-436
File Set Type
intermediate analysis
Summary
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
Samples
Mus musculus brain tissue, cellular sub pool(s): SS-PKR 436
Protocols
Attribution
Jason Buenrostro, Broad

Files

6 items
tbi
index
index of IGVFFI8189LVJD
Jason Buenrostro, Broad
839 KB
uniformly processed
validated
tar
kallisto single cell RNAseq output
unfiltered cell by gene in kallisto single cell RNAseq output
Jason Buenrostro, Broad
6.8 GB
uniformly processed
validated
bai
index
index of IGVFFI8724QZOH
Jason Buenrostro, Broad
4.9 MB
uniformly processed
validated
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
1.3 GB
uniformly processed
validated
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
18 GB
uniformly processed
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
1.2 GB
uniformly processed
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)

Donors

1 item
Accession
Aliases
Sex
Taxa
  • buenrostro-bernstein:Donor 2047
unspecified
Mus musculus

MeasurementSet Input File Sets

5 items
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)