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INDEXED
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AnalysisSet
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IGVFDS6344XBAV
IGVFDS6344XBAV
released
Json view
Aliases
charles-gersbach:cd8-tcells-analysis-set-atac-seq-chronic-activation-batf3
File Set Type
principal analysis
Summary
ATAC-seq: alignments, fold change over control, peak quantifications
Workflows
Gersbach GGR ATAC-seq Pipeline (IGVFWF6411VZLF)
Publications
Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens
Samples
CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
Protocols
https://www.protocols.io/view/atac-seq-primary-human-t-cells-overexpressing-batf-c5pfy5jn
Files
6 items
Accession
File Format
Content Type
Summary
Lab
File Size
Filtered
Upload Status
IGVFFI0911IUZS
tsv
fold change over control
GRCh38 fold change over control
Charles Gersbach, Duke
4.2 MB
validated
IGVFFI2041YQHB
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
1.9 GB
filtered
validated
IGVFFI4762WUEH
tsv
peak quantifications
GRCh38 peak quantifications
Charles Gersbach, Duke
2.2 MB
validated
IGVFFI4926QIFF
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
1.5 GB
filtered
validated
IGVFFI5684XZYN
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
1.6 GB
filtered
validated
IGVFFI9649KWTN
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
1.9 GB
filtered
validated
File Association Graph
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File Set
File
AnalysisSet
MeasurementSet
Samples
4 items
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM3805WZUU
PrimaryCell
CD8-positive, alpha-beta memory T cell
IGVFDS5584SPIV
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
IGVFSM6508DFUL
PrimaryCell
CD8-positive, alpha-beta memory T cell
IGVFDS5584SPIV
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
IGVFSM7232YAVV
PrimaryCell
CD8-positive, alpha-beta memory T cell
IGVFDS1868WXHB
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
IGVFSM8821YQXI
PrimaryCell
CD8-positive, alpha-beta memory T cell
IGVFDS1868WXHB
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
Donors
2 items
Accession
Aliases
Sex
Taxa
IGVFDO1522NSLA
charles-gersbach:cd8-tcells-donor-10
unspecified
Homo sapiens
IGVFDO9588OERW
charles-gersbach:cd8-tcells-donor-9
unspecified
Homo sapiens
Associated Construct Library Sets
2 items
Accession
Summary
Library Design Files
IGVFDS1868WXHB
expression vector library of BATF3
IGVFDS5584SPIV
control transduction expression vector library
MeasurementSet Input File Sets
Show aliases columns
4 items
Measurement Sets
Measured Samples
Controls
IGVFDS5328ZNKL
ATAC-seq integrating an expression vector library of BATF3
IGVFSM7232YAVV
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
IGVFDS9111EVGC
IGVFDS0986HRDF
ATAC-seq integrating an expression vector library of BATF3
IGVFSM8821YQXI
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
IGVFDS3810SJRN
IGVFDS9111EVGC
control transduction ATAC-seq integrating a control transduction expression vector library
IGVFSM3805WZUU
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
IGVFDS3810SJRN
control transduction ATAC-seq integrating a control transduction expression vector library
IGVFSM6508DFUL
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke