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INDEXED
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AnalysisSet
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IGVFDS6344XBAV
IGVFDS6344XBAV
released
Json view
Aliases
charles-gersbach:cd8-tcells-analysis-set-atac-seq-chronic-activation-batf3
File Set Type
principal analysis
Summary
ATAC-seq: fold change over control, peak quantifications
Publications
Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens
Samples
CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
Files
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI0911IUZS
tsv
fold change over control
GRCh38 fold change over control
Charles Gersbach, Duke
4.2 MB
validated
IGVFFI4762WUEH
tsv
peak quantifications
GRCh38 peak quantifications
Charles Gersbach, Duke
2.2 MB
validated
File Association Graph
IGVFDS3609QWUZ
2 files
intermediate analysis
2 files
IGVFFI4762WUEH
tsv
peak quantifications
IGVFFI0911IUZS
tsv
fold change over control
IGVFDS9202ZPBI
2 files
intermediate analysis
2 files
File Set
File
AnalysisSet
Samples
4 items
Accession
Type
Sample Terms
Summary
IGVFSM3805WZUU
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
IGVFSM6508DFUL
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
IGVFSM7232YAVV
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
IGVFSM8821YQXI
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
Donors
2 items
Accession
Aliases
Sex
Taxa
IGVFDO1522NSLA
charles-gersbach:cd8-tcells-donor-10
unspecified
Homo sapiens
IGVFDO9588OERW
charles-gersbach:cd8-tcells-donor-9
unspecified
Homo sapiens
AnalysisSet Input File Sets
Show aliases columns
2 items
Accession
Summary
IGVFDS3609QWUZ
ATAC-seq: alignments
IGVFDS9202ZPBI
ATAC-seq: alignments
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke