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IGVFDS5536ZQMO

released
Aliases
buenrostro-bernstein:surya-mouse-colitis-invitro-analysis-set
File Set Type
intermediate analysis
Summary
SHARE-seq: fragments, sparse gene count matrix
Workflows
Samples
Mus musculus colonic epithelium organoid induced to colon, at 27 day(s) post change
Protocols

Files

2 items
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
282 MB
validated
tsv
fragments
fragments
Jason Buenrostro, Broad
2.3 GB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days

Donors

6 items
Aliases
  • buenrostro-bernstein:surya-DSS21BC-DSS-m2
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS21BC-DSS-m7
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS21BC-DSS-m8
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS21BC-DSS-m1
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS21BC-DSS-m3
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS21BC-DSS-m9
unspecified
Mus musculus

MeasurementSet Input File Sets

8 items
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days

Attribution

Award
HG011986
Principal Investigator(s)
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad