{
"@context": "/terms/",
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],
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],
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],
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{
"category": "mismatched status",
"detail": "Preview matrix file [IGVFFI5439VMRC](/matrix-files/IGVFFI5439VMRC/) has in progress subobject analysis step version [65c095ee-8330-48d0-bc03-d930326fe393](/analysis-step-versions/65c095ee-8330-48d0-bc03-d930326fe393/).",
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"name": "audit_item_status",
"path": "/matrix-files/IGVFFI5439VMRC/"
},
{
"category": "mismatched status",
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"path": "/matrix-files/IGVFFI1746RIFK/"
}
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{
"category": "missing file format specifications",
"detail": "Matrix file [IGVFFI5439VMRC](/matrix-files/IGVFFI5439VMRC/) has no `file_format_specifications`. Matrix files are expected to link to a file format specifications document describing the axes and layers of the file.",
"level": 50,
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"name": "audit_file_no_file_format_specifications",
"path": "/matrix-files/IGVFFI5439VMRC/"
},
{
"category": "missing reference files",
"detail": "Analysis set [IGVFDS5498SDRJ](/analysis-sets/IGVFDS5498SDRJ/) has file(s) with no transcriptome `reference_files`: [IGVFFI7502QSNY](/matrix-files/IGVFFI7502QSNY/), [IGVFFI5439VMRC](/matrix-files/IGVFFI5439VMRC/), [IGVFFI1746RIFK](/matrix-files/IGVFFI1746RIFK/) Analysis set files processed from transcript sequence data are expected to link to a transcriptome reference.",
"level": 50,
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"name": "audit_missing_transcriptome",
"path": "/analysis-sets/IGVFDS5498SDRJ/"
},
{
"category": "missing file format specifications",
"detail": "Matrix file [IGVFFI1746RIFK](/matrix-files/IGVFFI1746RIFK/) has no `file_format_specifications`. Matrix files are expected to link to a file format specifications document describing the axes and layers of the file.",
"level": 50,
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"name": "audit_file_no_file_format_specifications",
"path": "/matrix-files/IGVFFI1746RIFK/"
},
{
"category": "missing file format specifications",
"detail": "Matrix file [IGVFFI7502QSNY](/matrix-files/IGVFFI7502QSNY/) has no `file_format_specifications`. Matrix files are expected to link to a file format specifications document describing the axes and layers of the file.",
"level": 50,
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}
]
},
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}
],
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],
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],
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},
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],
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},
{
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],
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"upload_status": "validated"
},
{
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"aliases": [
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],
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"s3_uri": "s3://igvf-files/2024/12/18/3de45f19-6f02-487c-a2c7-9b24638a93d8/IGVFFI3722AJJC.csv.gz",
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},
{
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],
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"creation_timestamp": "2024-12-18T20:47:52.299360+00:00",
"file_format": "csv",
"file_size": 32646,
"href": "/tabular-files/IGVFFI0141RZRZ/@@download/IGVFFI0141RZRZ.csv.gz",
"s3_uri": "s3://igvf-files/2024/12/18/8e91f719-30a4-48ed-b731-2d863315241d/IGVFFI0141RZRZ.csv.gz",
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}
],
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"input_file_sets": [
{
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"aliases": [
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],
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},
{
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],
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},
{
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"aliases": [
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],
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},
{
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"aliases": [
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],
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"status": "preview"
},
{
"@id": "/auxiliary-sets/IGVFDS2536BETY/",
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"aliases": [
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],
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"status": "preview"
},
{
"@id": "/auxiliary-sets/IGVFDS3364ARLO/",
"accession": "IGVFDS3364ARLO",
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],
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},
{
"@id": "/measurement-sets/IGVFDS3695BOGD/",
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],
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},
{
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],
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},
{
"@id": "/auxiliary-sets/IGVFDS4210TUPX/",
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],
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},
{
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],
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},
{
"@id": "/auxiliary-sets/IGVFDS1672IHVM/",
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],
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},
{
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],
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}
],
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},
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],
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"samples": [
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"Biosample",
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"Item"
],
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],
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],
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],
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],
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}
],
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},
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},
{
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],
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],
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{
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}
],
"sample_terms": [
{
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],
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],
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}
],
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"targeted_sample_term": {
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},
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},
{
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"Item"
],
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],
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],
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"modifications": [
{
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}
],
"sample_terms": [
{
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"@type": [
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"Item"
],
"aliases": [
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],
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}
],
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"targeted_sample_term": {
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},
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},
{
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"Biosample",
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"Item"
],
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],
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],
"institutional_certificates": [],
"modifications": [
{
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}
],
"sample_terms": [
{
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"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
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],
"status": "released",
"summary": "GM25256 (WTC-11)",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "preview",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW430) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000746/",
"status": "released",
"term_name": "cardiac muscle cell"
},
"taxa": "Homo sapiens"
}
],
"schema_version": "9",
"status": "preview",
"submitted_by": {
"@id": "/users/b05645f1-2d56-4a5e-b272-4601e555a3fa/",
"title": "Mpathi Nzima"
},
"submitted_files_timestamp": "2024-12-17T22:46:12.388714+00:00",
"summary": "interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression",
"uuid": "b66e7cc5-5410-4e77-9437-f9df054bc0c0",
"workflows": [
{
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"accession": "IGVFWF0190YALU",
"name": "Hon Perturb-seq Workflow",
"status": "in progress",
"uniform_pipeline": false
}
]
}