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IGVFDS5448FWBW

released
Aliases
ansuman-satpathy:igvf0_analysis_set
File Set Type
intermediate analysis
Summary
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Description
Quality-control workflow performed by Satpathy Lab - WTC11 endothelial differentiation
Workflows
Samples
Homo sapiens multiplexed sample of GM25256 (WTC-11)
Protocols
Attribution
Ansuman Satpathy, Stanford

Files

5 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.5 MB
validation exempted
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
403 KB
validated
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
168 MB
validated
tbi
index
index of IGVFFI9532SPYG
Ansuman Satpathy, Stanford
1.8 MB
validated
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.9 GB
validation exempted

File Association Graph

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File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days; ... and 21 more samples

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

MeasurementSet Input File Sets

2 items
Associated Auxiliary Sets
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days; ... and 21 more samples
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days; ... and 21 more samples

AuxiliarySet Input File Sets

1 item
Auxiliary Sets
Measured Samples
Associated Measurement Sets
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days; ... and 21 more samples