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IGVFDS5448FWBW

released
Aliases
ansuman-satpathy:igvf0_analysis_set
File Set Type
intermediate analysis
Summary
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Description
Quality-control workflow performed by Satpathy Lab - WTC11 endothelial differentiation
Workflows
Samples
GM25256 (WTC-11) differentiated cell specimen and multiplexed sample
Protocols

Files

5 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.5 MB
validation exempted
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
403 KB
validated
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
168 MB
validated
tbi
index
index of IGVFFI9532SPYG
Ansuman Satpathy, Stanford
1.8 MB
validated
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.9 GB
validation exempted

File Association Graph

IGVFDS6243XJYN4 filesexperimental data4 filesIGVFFI3143UHIUhdf5raw feature barcode…IGVFDS7482RDGX4 filesexperimental data4 filesIGVFFI9532SPYGtsvfragmentsIGVFFI0480XBYKbedpeaksIGVFFI7419FNVXtbiindexIGVFDS4882ESVG4 fileslipid-conjugated oligo…4 filesIGVFFI0978MWOPtsvcell hashing barcodes
File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days, male, Homo sapiens; ... and 21 more samples

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

MeasurementSet Input File Sets

2 items
Associated Auxiliary Sets
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days, male, Homo sapiens; ... and 21 more samples
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days, male, Homo sapiens; ... and 21 more samples

AuxiliarySet Input File Sets

1 item
Auxiliary Sets
Measured Samples
Associated Measurement Sets
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days, male, Homo sapiens; ... and 21 more samples

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford