IGVFDS5395YECK

released
1{
2    "@context": "/terms/",
3    "@id": "/analysis-sets/IGVFDS5395YECK/",
4    "@type": [
5        "AnalysisSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS5395YECK",
10    "aliases": [
11        "ali-mortazavi:igvf_003_Subpool_14_total+core"
12    ],
13    "assay_titles": [
14        "Parse SPLiT-seq"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing demultiplexed sample",
20                "detail": "Analysis set [IGVFDS5395YECK](/analysis-sets/IGVFDS5395YECK/) has `input_file_sets` with multiplexed samples: [IGVFSM9366TSMN](/multiplexed-samples/IGVFSM9366TSMN/) but no `demultiplexed_sample`. Analysis sets with multiplexed samples are expected to specify a demultiplexed sample.",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_analysis_set_multiplexed_samples",
24                "path": "/analysis-sets/IGVFDS5395YECK/"
25            },
26            {
27                "category": "missing publication",
28                "detail": "Analysis set [IGVFDS5395YECK](/analysis-sets/IGVFDS5395YECK/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_file_set_missing_publication",
32                "path": "/analysis-sets/IGVFDS5395YECK/"
33            },
34            {
35                "category": "NTR term ID",
36                "detail": "Sample term for [NTR_0000750](/sample-terms/NTR_0000750/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_ntr_term_id",
40                "path": "/sample-terms/NTR_0000750/"
41            },
42            {
43                "category": "NTR term ID",
44                "detail": "Sample term for [NTR_0000751](/sample-terms/NTR_0000751/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
45                "level": 30,
46                "level_name": "INTERNAL_ACTION",
47                "name": "audit_ntr_term_id",
48                "path": "/sample-terms/NTR_0000751/"
49            },
50            {
51                "category": "NTR term ID",
52                "detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
53                "level": 30,
54                "level_name": "INTERNAL_ACTION",
55                "name": "audit_ntr_term_id",
56                "path": "/sample-terms/NTR_0000646/"
57            },
58            {
59                "category": "mismatched status",
60                "detail": "Released multiplexed sample [IGVFSM9366TSMN](/multiplexed-samples/IGVFSM9366TSMN/) has in progress subobject tabular file [IGVFFI4465NRTD](/tabular-files/IGVFFI4465NRTD/).",
61                "level": 30,
62                "level_name": "INTERNAL_ACTION",
63                "name": "audit_item_status",
64                "path": "/multiplexed-samples/IGVFSM9366TSMN/"
65            },
66            {
67                "category": "missing publication",
68                "detail": "Multiplexed sample [IGVFSM9366TSMN](/multiplexed-samples/IGVFSM9366TSMN/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
69                "level": 30,
70                "level_name": "INTERNAL_ACTION",
71                "name": "audit_sample_missing_publication",
72                "path": "/multiplexed-samples/IGVFSM9366TSMN/"
73            },
74            {
75                "category": "NTR term ID",
76                "detail": "Sample term for [NTR_0000647](/sample-terms/NTR_0000647/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
77                "level": 30,
78                "level_name": "INTERNAL_ACTION",
79                "name": "audit_ntr_term_id",
80                "path": "/sample-terms/NTR_0000647/"
81            }
82        ]
83    },
84    "award": {
85        "@id": "/awards/HG012077/",
86        "component": "mapping",
87        "contact_pi": {
88            "@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
89            "title": "Ali Mortazavi"
90        },
91        "title": "Center for Mouse Genomic Variation at Single Cell Resolution"
92    },
93    "control_for": [],
94    "creation_timestamp": "2025-04-05T02:01:44.617458+00:00",
95    "data_use_limitation_summaries": [
96        "no certificate"
97    ],
98    "description": "8 cube mouse founder strains plate igvf_003 Subpool_14 with Cortex/Hippocampus as the primary tissue and Heart as the genetically multiplexed tissue",
99    "documents": [
100        "/documents/afa1a317-89d4-415f-95bd-7f0c822496cb/"
101    ],
102    "donors": [
103        {
104            "@id": "/rodent-donors/IGVFDO6607QZPA/",
105            "accession": "IGVFDO6607QZPA",
106            "aliases": [
107                "ali-mortazavi:050_NZOJ_10F"
108            ],
109            "sex": "female",
110            "status": "released",
111            "strain_background": "NZO/H1LtJ (NZO)",
112            "taxa": "Mus musculus"
113        },
114        {
115            "@id": "/rodent-donors/IGVFDO7610XXRR/",
116            "accession": "IGVFDO7610XXRR",
117            "aliases": [
118                "ali-mortazavi:072_NODJ_10F"
119            ],
120            "sex": "female",
121            "status": "released",
122            "strain_background": "NOD/ShiLtJ (NOD)",
123            "taxa": "Mus musculus"
124        },
125        {
126            "@id": "/rodent-donors/IGVFDO1744FDIX/",
127            "accession": "IGVFDO1744FDIX",
128            "aliases": [
129                "ali-mortazavi:036_129S1J_10F"
130            ],
131            "sex": "female",
132            "status": "released",
133            "strain_background": "129S1/SvImJ (129)",
134            "taxa": "Mus musculus"
135        },
136        {
137            "@id": "/rodent-donors/IGVFDO0813DZTW/",
138            "accession": "IGVFDO0813DZTW",
139            "aliases": [
140                "ali-mortazavi:069_NODJ_10M"
141            ],
142            "sex": "male",
143            "status": "released",
144            "strain_background": "NOD/ShiLtJ (NOD)",
145            "taxa": "Mus musculus"
146        },
147        {
148            "@id": "/rodent-donors/IGVFDO3762EAWT/",
149            "accession": "IGVFDO3762EAWT",
150            "aliases": [
151                "ali-mortazavi:076_PWKJ_10F"
152            ],
153            "sex": "female",
154            "status": "released",
155            "strain_background": "PWK/PhJ (PWK)",
156            "taxa": "Mus musculus"
157        },
158        {
159            "@id": "/rodent-donors/IGVFDO4788BIQB/",
160            "accession": "IGVFDO4788BIQB",
161            "aliases": [
162                "ali-mortazavi:020_B6J_10F"
163            ],
164            "sex": "female",
165            "status": "released",
166            "strain_background": "C57BL/6J (B6)",
167            "taxa": "Mus musculus"
168        },
169        {
170            "@id": "/rodent-donors/IGVFDO7957DMLJ/",
171            "accession": "IGVFDO7957DMLJ",
172            "aliases": [
173                "ali-mortazavi:033_AJ_10M"
174            ],
175            "sex": "male",
176            "status": "released",
177            "strain_background": "A/J (AJ)",
178            "taxa": "Mus musculus"
179        },
180        {
181            "@id": "/rodent-donors/IGVFDO5085MJSP/",
182            "accession": "IGVFDO5085MJSP",
183            "aliases": [
184                "ali-mortazavi:048_NZOJ_10F"
185            ],
186            "sex": "female",
187            "status": "released",
188            "strain_background": "NZO/H1LtJ (NZO)",
189            "taxa": "Mus musculus"
190        },
191        {
192            "@id": "/rodent-donors/IGVFDO4725SNCJ/",
193            "accession": "IGVFDO4725SNCJ",
194            "aliases": [
195                "ali-mortazavi:017_B6J_10M"
196            ],
197            "sex": "male",
198            "status": "released",
199            "strain_background": "C57BL/6J (B6)",
200            "taxa": "Mus musculus"
201        },
202        {
203            "@id": "/rodent-donors/IGVFDO0026YRCR/",
204            "accession": "IGVFDO0026YRCR",
205            "aliases": [
206                "ali-mortazavi:018_B6J_10F"
207            ],
208            "sex": "female",
209            "status": "released",
210            "strain_background": "C57BL/6J (B6)",
211            "taxa": "Mus musculus"
212        },
213        {
214            "@id": "/rodent-donors/IGVFDO6219LVKW/",
215            "accession": "IGVFDO6219LVKW",
216            "aliases": [
217                "ali-mortazavi:032_AJ_10F"
218            ],
219            "sex": "female",
220            "status": "released",
221            "strain_background": "A/J (AJ)",
222            "taxa": "Mus musculus"
223        },
224        {
225            "@id": "/rodent-donors/IGVFDO9560CEGZ/",
226            "accession": "IGVFDO9560CEGZ",
227            "aliases": [
228                "ali-mortazavi:061_WSBJ_10M"
229            ],
230            "sex": "male",
231            "status": "released",
232            "strain_background": "WSB/EiJ (WSB)",
233            "taxa": "Mus musculus"
234        },
235        {
236            "@id": "/rodent-donors/IGVFDO0696DMIA/",
237            "accession": "IGVFDO0696DMIA",
238            "aliases": [
239                "ali-mortazavi:057_WSBJ_10M"
240            ],
241            "sex": "male",
242            "status": "released",
243            "strain_background": "WSB/EiJ (WSB)",
244            "taxa": "Mus musculus"
245        },
246        {
247            "@id": "/rodent-donors/IGVFDO7951JDSP/",
248            "accession": "IGVFDO7951JDSP",
249            "aliases": [
250                "ali-mortazavi:026_AJ_10F"
251            ],
252            "sex": "female",
253            "status": "released",
254            "strain_background": "A/J (AJ)",
255            "taxa": "Mus musculus"
256        },
257        {
258            "@id": "/rodent-donors/IGVFDO2292YGGE/",
259            "accession": "IGVFDO2292YGGE",
260            "aliases": [
261                "ali-mortazavi:049_NZOJ_10M"
262            ],
263            "sex": "male",
264            "status": "released",
265            "strain_background": "NZO/H1LtJ (NZO)",
266            "taxa": "Mus musculus"
267        },
268        {
269            "@id": "/rodent-donors/IGVFDO3603MEIO/",
270            "accession": "IGVFDO3603MEIO",
271            "aliases": [
272                "ali-mortazavi:084_PWKJ_10F"
273            ],
274            "sex": "female",
275            "status": "released",
276            "strain_background": "PWK/PhJ (PWK)",
277            "taxa": "Mus musculus"
278        },
279        {
280            "@id": "/rodent-donors/IGVFDO5737FRWD/",
281            "accession": "IGVFDO5737FRWD",
282            "aliases": [
283                "ali-mortazavi:081_PWKJ_10M"
284            ],
285            "sex": "male",
286            "status": "released",
287            "strain_background": "PWK/PhJ (PWK)",
288            "taxa": "Mus musculus"
289        },
290        {
291            "@id": "/rodent-donors/IGVFDO9199TPBC/",
292            "accession": "IGVFDO9199TPBC",
293            "aliases": [
294                "ali-mortazavi:071_NODJ_10M"
295            ],
296            "sex": "male",
297            "status": "released",
298            "strain_background": "NOD/ShiLtJ (NOD)",
299            "taxa": "Mus musculus"
300        },
301        {
302            "@id": "/rodent-donors/IGVFDO0430HQIU/",
303            "accession": "IGVFDO0430HQIU",
304            "aliases": [
305                "ali-mortazavi:041_129S1J_10M"
306            ],
307            "sex": "male",
308            "status": "released",
309            "strain_background": "129S1/SvImJ (129)",
310            "taxa": "Mus musculus"
311        },
312        {
313            "@id": "/rodent-donors/IGVFDO1643VEDI/",
314            "accession": "IGVFDO1643VEDI",
315            "aliases": [
316                "ali-mortazavi:019_B6J_10M"
317            ],
318            "sex": "male",
319            "status": "released",
320            "strain_background": "C57BL/6J (B6)",
321            "taxa": "Mus musculus"
322        },
323        {
324            "@id": "/rodent-donors/IGVFDO2645GUSC/",
325            "accession": "IGVFDO2645GUSC",
326            "aliases": [
327                "ali-mortazavi:060_WSBJ_10F"
328            ],
329            "sex": "female",
330            "status": "released",
331            "strain_background": "WSB/EiJ (WSB)",
332            "taxa": "Mus musculus"
333        },
334        {
335            "@id": "/rodent-donors/IGVFDO6066JIEJ/",
336            "accession": "IGVFDO6066JIEJ",
337            "aliases": [
338                "ali-mortazavi:043_129S1J_10M"
339            ],
340            "sex": "male",
341            "status": "released",
342            "strain_background": "129S1/SvImJ (129)",
343            "taxa": "Mus musculus"
344        },
345        {
346            "@id": "/rodent-donors/IGVFDO6614NNPY/",
347            "accession": "IGVFDO6614NNPY",
348            "aliases": [
349                "ali-mortazavi:089_CASTJ_10M"
350            ],
351            "sex": "male",
352            "status": "released",
353            "strain_background": "CAST/EiJ (CAST)",
354            "taxa": "Mus musculus"
355        },
356        {
357            "@id": "/rodent-donors/IGVFDO5872DFML/",
358            "accession": "IGVFDO5872DFML",
359            "aliases": [
360                "ali-mortazavi:094_CASTJ_10F"
361            ],
362            "sex": "female",
363            "status": "released",
364            "strain_background": "CAST/EiJ (CAST)",
365            "taxa": "Mus musculus"
366        },
367        {
368            "@id": "/rodent-donors/IGVFDO0681EHNP/",
369            "accession": "IGVFDO0681EHNP",
370            "aliases": [
371                "ali-mortazavi:052_NZOJ_10F"
372            ],
373            "sex": "female",
374            "status": "released",
375            "strain_background": "NZO/H1LtJ (NZO)",
376            "taxa": "Mus musculus"
377        },
378        {
379            "@id": "/rodent-donors/IGVFDO8904OIIT/",
380            "accession": "IGVFDO8904OIIT",
381            "aliases": [
382                "ali-mortazavi:044_129S1J_10F"
383            ],
384            "sex": "female",
385            "status": "released",
386            "strain_background": "129S1/SvImJ (129)",
387            "taxa": "Mus musculus"
388        },
389        {
390            "@id": "/rodent-donors/IGVFDO1477BPVO/",
391            "accession": "IGVFDO1477BPVO",
392            "aliases": [
393                "ali-mortazavi:088_CASTJ_10F"
394            ],
395            "sex": "female",
396            "status": "released",
397            "strain_background": "CAST/EiJ (CAST)",
398            "taxa": "Mus musculus"
399        },
400        {
401            "@id": "/rodent-donors/IGVFDO5502NJPS/",
402            "accession": "IGVFDO5502NJPS",
403            "aliases": [
404                "ali-mortazavi:038_129S1J_10F"
405            ],
406            "sex": "female",
407            "status": "released",
408            "strain_background": "129S1/SvImJ (129)",
409            "taxa": "Mus musculus"
410        },
411        {
412            "@id": "/rodent-donors/IGVFDO6141KSSQ/",
413            "accession": "IGVFDO6141KSSQ",
414            "aliases": [
415                "ali-mortazavi:024_B6J_10F"
416            ],
417            "sex": "female",
418            "status": "released",
419            "strain_background": "C57BL/6J (B6)",
420            "taxa": "Mus musculus"
421        },
422        {
423            "@id": "/rodent-donors/IGVFDO7007WBAX/",
424            "accession": "IGVFDO7007WBAX",
425            "aliases": [
426                "ali-mortazavi:016_B6J_10F"
427            ],
428            "sex": "female",
429            "status": "released",
430            "strain_background": "C57BL/6J (B6)",
431            "taxa": "Mus musculus"
432        },
433        {
434            "@id": "/rodent-donors/IGVFDO1452VDIT/",
435            "accession": "IGVFDO1452VDIT",
436            "aliases": [
437                "ali-mortazavi:035_AJ_10M"
438            ],
439            "sex": "male",
440            "status": "released",
441            "strain_background": "A/J (AJ)",
442            "taxa": "Mus musculus"
443        },
444        {
445            "@id": "/rodent-donors/IGVFDO2831PZHE/",
446            "accession": "IGVFDO2831PZHE",
447            "aliases": [
448                "ali-mortazavi:077_PWKJ_10M"
449            ],
450            "sex": "male",
451            "status": "released",
452            "strain_background": "PWK/PhJ (PWK)",
453            "taxa": "Mus musculus"
454        },
455        {
456            "@id": "/rodent-donors/IGVFDO4469VYEZ/",
457            "accession": "IGVFDO4469VYEZ",
458            "aliases": [
459                "ali-mortazavi:073_NODJ_10M"
460            ],
461            "sex": "male",
462            "status": "released",
463            "strain_background": "NOD/ShiLtJ (NOD)",
464            "taxa": "Mus musculus"
465        },
466        {
467            "@id": "/rodent-donors/IGVFDO6112GRYR/",
468            "accession": "IGVFDO6112GRYR",
469            "aliases": [
470                "ali-mortazavi:059_WSBJ_10M"
471            ],
472            "sex": "male",
473            "status": "released",
474            "strain_background": "WSB/EiJ (WSB)",
475            "taxa": "Mus musculus"
476        },
477        {
478            "@id": "/rodent-donors/IGVFDO9142EUBJ/",
479            "accession": "IGVFDO9142EUBJ",
480            "aliases": [
481                "ali-mortazavi:096_WSBJ_10F"
482            ],
483            "sex": "female",
484            "status": "released",
485            "strain_background": "WSB/EiJ (WSB)",
486            "taxa": "Mus musculus"
487        },
488        {
489            "@id": "/rodent-donors/IGVFDO9340WGNV/",
490            "accession": "IGVFDO9340WGNV",
491            "aliases": [
492                "ali-mortazavi:037_129S1J_10M"
493            ],
494            "sex": "male",
495            "status": "released",
496            "strain_background": "129S1/SvImJ (129)",
497            "taxa": "Mus musculus"
498        },
499        {
500            "@id": "/rodent-donors/IGVFDO9374WXKK/",
501            "accession": "IGVFDO9374WXKK",
502            "aliases": [
503                "ali-mortazavi:028_AJ_10F"
504            ],
505            "sex": "female",
506            "status": "released",
507            "strain_background": "A/J (AJ)",
508            "taxa": "Mus musculus"
509        },
510        {
511            "@id": "/rodent-donors/IGVFDO0624KKTV/",
512            "accession": "IGVFDO0624KKTV",
513            "aliases": [
514                "ali-mortazavi:030_AJ_10F"
515            ],
516            "sex": "female",
517            "status": "released",
518            "strain_background": "A/J (AJ)",
519            "taxa": "Mus musculus"
520        },
521        {
522            "@id": "/rodent-donors/IGVFDO2301HIUQ/",
523            "accession": "IGVFDO2301HIUQ",
524            "aliases": [
525                "ali-mortazavi:067_NODJ_10M"
526            ],
527            "sex": "male",
528            "status": "released",
529            "strain_background": "NOD/ShiLtJ (NOD)",
530            "taxa": "Mus musculus"
531        },
532        {
533            "@id": "/rodent-donors/IGVFDO3436ZMLY/",
534            "accession": "IGVFDO3436ZMLY",
535            "aliases": [
536                "ali-mortazavi:091_CASTJ_10M"
537            ],
538            "sex": "male",
539            "status": "released",
540            "strain_background": "CAST/EiJ (CAST)",
541            "taxa": "Mus musculus"
542        },
543        {
544            "@id": "/rodent-donors/IGVFDO9890MXGN/",
545            "accession": "IGVFDO9890MXGN",
546            "aliases": [
547                "ali-mortazavi:068_NODJ_10F"
548            ],
549            "sex": "female",
550            "status": "released",
551            "strain_background": "NOD/ShiLtJ (NOD)",
552            "taxa": "Mus musculus"
553        },
554        {
555            "@id": "/rodent-donors/IGVFDO2517TXOT/",
556            "accession": "IGVFDO2517TXOT",
557            "aliases": [
558                "ali-mortazavi:092_CASTJ_10F"
559            ],
560            "sex": "female",
561            "status": "released",
562            "strain_background": "CAST/EiJ (CAST)",
563            "taxa": "Mus musculus"
564        },
565        {
566            "@id": "/rodent-donors/IGVFDO3534MDFF/",
567            "accession": "IGVFDO3534MDFF",
568            "aliases": [
569                "ali-mortazavi:046_NZOJ_10F"
570            ],
571            "sex": "female",
572            "status": "released",
573            "strain_background": "NZO/H1LtJ (NZO)",
574            "taxa": "Mus musculus"
575        },
576        {
577            "@id": "/rodent-donors/IGVFDO3655FKMR/",
578            "accession": "IGVFDO3655FKMR",
579            "aliases": [
580                "ali-mortazavi:025_B6J_10M"
581            ],
582            "sex": "male",
583            "status": "released",
584            "strain_background": "C57BL/6J (B6)",
585            "taxa": "Mus musculus"
586        },
587        {
588            "@id": "/rodent-donors/IGVFDO5539RLXJ/",
589            "accession": "IGVFDO5539RLXJ",
590            "aliases": [
591                "ali-mortazavi:029_AJ_10M"
592            ],
593            "sex": "male",
594            "status": "released",
595            "strain_background": "A/J (AJ)",
596            "taxa": "Mus musculus"
597        },
598        {
599            "@id": "/rodent-donors/IGVFDO0853BCOL/",
600            "accession": "IGVFDO0853BCOL",
601            "aliases": [
602                "ali-mortazavi:058_WSBJ_10F"
603            ],
604            "sex": "female",
605            "status": "released",
606            "strain_background": "WSB/EiJ (WSB)",
607            "taxa": "Mus musculus"
608        },
609        {
610            "@id": "/rodent-donors/IGVFDO2319OUEC/",
611            "accession": "IGVFDO2319OUEC",
612            "aliases": [
613                "ali-mortazavi:045_129S1J_10M"
614            ],
615            "sex": "male",
616            "status": "released",
617            "strain_background": "129S1/SvImJ (129)",
618            "taxa": "Mus musculus"
619        },
620        {
621            "@id": "/rodent-donors/IGVFDO7062NBTQ/",
622            "accession": "IGVFDO7062NBTQ",
623            "aliases": [
624                "ali-mortazavi:079_PWKJ_10M"
625            ],
626            "sex": "male",
627            "status": "released",
628            "strain_background": "PWK/PhJ (PWK)",
629            "taxa": "Mus musculus"
630        },
631        {
632            "@id": "/rodent-donors/IGVFDO0751WQHI/",
633            "accession": "IGVFDO0751WQHI",
634            "aliases": [
635                "ali-mortazavi:080_PWKJ_10F"
636            ],
637            "sex": "female",
638            "status": "released",
639            "strain_background": "PWK/PhJ (PWK)",
640            "taxa": "Mus musculus"
641        },
642        {
643            "@id": "/rodent-donors/IGVFDO5258MBVH/",
644            "accession": "IGVFDO5258MBVH",
645            "aliases": [
646                "ali-mortazavi:040_129S1J_10F"
647            ],
648            "sex": "female",
649            "status": "released",
650            "strain_background": "129S1/SvImJ (129)",
651            "taxa": "Mus musculus"
652        },
653        {
654            "@id": "/rodent-donors/IGVFDO9510ILZG/",
655            "accession": "IGVFDO9510ILZG",
656            "aliases": [
657                "ali-mortazavi:053_NZOJ_10M"
658            ],
659            "sex": "male",
660            "status": "released",
661            "strain_background": "NZO/H1LtJ (NZO)",
662            "taxa": "Mus musculus"
663        },
664        {
665            "@id": "/rodent-donors/IGVFDO3662UKFW/",
666            "accession": "IGVFDO3662UKFW",
667            "aliases": [
668                "ali-mortazavi:087_CASTJ_10M"
669            ],
670            "sex": "male",
671            "status": "released",
672            "strain_background": "CAST/EiJ (CAST)",
673            "taxa": "Mus musculus"
674        },
675        {
676            "@id": "/rodent-donors/IGVFDO3207TERA/",
677            "accession": "IGVFDO3207TERA",
678            "aliases": [
679                "ali-mortazavi:086_CASTJ_10F"
680            ],
681            "sex": "female",
682            "status": "released",
683            "strain_background": "CAST/EiJ (CAST)",
684            "taxa": "Mus musculus"
685        },
686        {
687            "@id": "/rodent-donors/IGVFDO8322VYDU/",
688            "accession": "IGVFDO8322VYDU",
689            "aliases": [
690                "ali-mortazavi:093_CASTJ_10M"
691            ],
692            "sex": "male",
693            "status": "released",
694            "strain_background": "CAST/EiJ (CAST)",
695            "taxa": "Mus musculus"
696        },
697        {
698            "@id": "/rodent-donors/IGVFDO2106EEWB/",
699            "accession": "IGVFDO2106EEWB",
700            "aliases": [
701                "ali-mortazavi:078_PWKJ_10F"
702            ],
703            "sex": "female",
704            "status": "released",
705            "strain_background": "PWK/PhJ (PWK)",
706            "taxa": "Mus musculus"
707        },
708        {
709            "@id": "/rodent-donors/IGVFDO4707SGWM/",
710            "accession": "IGVFDO4707SGWM",
711            "aliases": [
712                "ali-mortazavi:051_NZOJ_10M"
713            ],
714            "sex": "male",
715            "status": "released",
716            "strain_background": "NZO/H1LtJ (NZO)",
717            "taxa": "Mus musculus"
718        },
719        {
720            "@id": "/rodent-donors/IGVFDO5177QEWF/",
721            "accession": "IGVFDO5177QEWF",
722            "aliases": [
723                "ali-mortazavi:063_WSBJ_10M"
724            ],
725            "sex": "male",
726            "status": "released",
727            "strain_background": "WSB/EiJ (WSB)",
728            "taxa": "Mus musculus"
729        },
730        {
731            "@id": "/rodent-donors/IGVFDO5183UZGS/",
732            "accession": "IGVFDO5183UZGS",
733            "aliases": [
734                "ali-mortazavi:021_B6J_10M"
735            ],
736            "sex": "male",
737            "status": "released",
738            "strain_background": "C57BL/6J (B6)",
739            "taxa": "Mus musculus"
740        },
741        {
742            "@id": "/rodent-donors/IGVFDO7255VZBN/",
743            "accession": "IGVFDO7255VZBN",
744            "aliases": [
745                "ali-mortazavi:062_WSBJ_10F"
746            ],
747            "sex": "female",
748            "status": "released",
749            "strain_background": "WSB/EiJ (WSB)",
750            "taxa": "Mus musculus"
751        },
752        {
753            "@id": "/rodent-donors/IGVFDO8152XDDC/",
754            "accession": "IGVFDO8152XDDC",
755            "aliases": [
756                "ali-mortazavi:090_CASTJ_10F"
757            ],
758            "sex": "female",
759            "status": "released",
760            "strain_background": "CAST/EiJ (CAST)",
761            "taxa": "Mus musculus"
762        },
763        {
764            "@id": "/rodent-donors/IGVFDO3640WUBU/",
765            "accession": "IGVFDO3640WUBU",
766            "aliases": [
767                "ali-mortazavi:066_NODJ_10F"
768            ],
769            "sex": "female",
770            "status": "released",
771            "strain_background": "NOD/ShiLtJ (NOD)",
772            "taxa": "Mus musculus"
773        },
774        {
775            "@id": "/rodent-donors/IGVFDO7254QNQZ/",
776            "accession": "IGVFDO7254QNQZ",
777            "aliases": [
778                "ali-mortazavi:031_AJ_10M"
779            ],
780            "sex": "male",
781            "status": "released",
782            "strain_background": "A/J (AJ)",
783            "taxa": "Mus musculus"
784        },
785        {
786            "@id": "/rodent-donors/IGVFDO5523UFUN/",
787            "accession": "IGVFDO5523UFUN",
788            "aliases": [
789                "ali-mortazavi:070_NODJ_10F"
790            ],
791            "sex": "female",
792            "status": "released",
793            "strain_background": "NOD/ShiLtJ (NOD)",
794            "taxa": "Mus musculus"
795        },
796        {
797            "@id": "/rodent-donors/IGVFDO9202WGJZ/",
798            "accession": "IGVFDO9202WGJZ",
799            "aliases": [
800                "ali-mortazavi:085_PWKJ_10M"
801            ],
802            "sex": "male",
803            "status": "released",
804            "strain_background": "PWK/PhJ (PWK)",
805            "taxa": "Mus musculus"
806        },
807        {
808            "@id": "/rodent-donors/IGVFDO8958JQIY/",
809            "accession": "IGVFDO8958JQIY",
810            "aliases": [
811                "ali-mortazavi:047_NZOJ_10M"
812            ],
813            "sex": "male",
814            "status": "released",
815            "strain_background": "NZO/H1LtJ (NZO)",
816            "taxa": "Mus musculus"
817        }
818    ],
819    "file_set_type": "intermediate analysis",
820    "files": [
821        {
822            "@id": "/matrix-files/IGVFFI8873RHRT/",
823            "accession": "IGVFFI8873RHRT",
824            "content_type": "sparse gene count matrix",
825            "creation_timestamp": "2025-04-06T22:28:53.963986+00:00",
826            "derived_from": [
827                "/sequence-files/IGVFFI3902HPZP/",
828                "/sequence-files/IGVFFI1253KAKX/",
829                "/sequence-files/IGVFFI7971FZOI/",
830                "/sequence-files/IGVFFI0788VPRR/",
831                "/sequence-files/IGVFFI2801DEXE/",
832                "/sequence-files/IGVFFI0591NQIT/",
833                "/sequence-files/IGVFFI6647GGNL/",
834                "/sequence-files/IGVFFI3290BFJB/",
835                "/sequence-files/IGVFFI9224RWDM/",
836                "/sequence-files/IGVFFI5630YDMJ/",
837                "/sequence-files/IGVFFI1490CGNG/",
838                "/sequence-files/IGVFFI3218IHTK/",
839                "/sequence-files/IGVFFI7861GUHL/",
840                "/sequence-files/IGVFFI6861BDKN/",
841                "/sequence-files/IGVFFI6217DPMD/",
842                "/sequence-files/IGVFFI7919FMDA/"
843            ],
844            "file_format": "tar",
845            "file_size": 1049132808,
846            "href": "/matrix-files/IGVFFI8873RHRT/@@download/IGVFFI8873RHRT.tar.gz",
847            "md5sum": "6e0d85370882a625df43336145ff6f1b",
848            "s3_uri": "s3://igvf-files/2025/04/06/f74cda99-17f6-4744-b97f-37cd9a1c41da/IGVFFI8873RHRT.tar.gz",
849            "status": "released",
850            "submitted_file_name": "igvf_003/igvf_003_Subpool_14_total+core.tar.gz",
851            "upload_status": "validated"
852        }
853    ],
854    "functional_assay_mechanisms": [],
855    "input_file_sets": [
856        {
857            "@id": "/measurement-sets/IGVFDS6964GFPC/",
858            "accession": "IGVFDS6964GFPC",
859            "aliases": [
860                "ali-mortazavi:003_67M_illumina"
861            ],
862            "file_set_type": "experimental data",
863            "status": "released"
864        }
865    ],
866    "input_for": [
867        "/analysis-sets/IGVFDS2950ZMLN/",
868        "/analysis-sets/IGVFDS0868APKJ/"
869    ],
870    "lab": {
871        "@id": "/labs/ali-mortazavi/",
872        "title": "Ali Mortazavi, UCI"
873    },
874    "protocols": [
875        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-dm6gp3zedvzp/v2",
876        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-eq2lyj17rlx9/v1",
877        "https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
878        "https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
879    ],
880    "release_timestamp": "2025-04-19T17:51:21.374739+00:00",
881    "sample_summary": "Mus musculus multiplexed sample of heart, left cerebral cortex, left hippocampal formation, right cerebral cortex, right hippocampal formation",
882    "samples": [
883        {
884            "@id": "/multiplexed-samples/IGVFSM9366TSMN/",
885            "@type": [
886                "MultiplexedSample",
887                "Sample",
888                "Item"
889            ],
890            "accession": "IGVFSM9366TSMN",
891            "aliases": [
892                "ali-mortazavi:subpool_003_67M"
893            ],
894            "cellular_sub_pool": "003_67M",
895            "classifications": [
896                "tissue",
897                "multiplexed sample"
898            ],
899            "disease_terms": [],
900            "institutional_certificates": [],
901            "modifications": [],
902            "sample_terms": [
903                {
904                    "@id": "/sample-terms/NTR_0000646/",
905                    "@type": [
906                        "SampleTerm",
907                        "OntologyTerm",
908                        "Item"
909                    ],
910                    "status": "released",
911                    "summary": "left cerebral cortex",
912                    "term_name": "left cerebral cortex"
913                },
914                {
915                    "@id": "/sample-terms/NTR_0000647/",
916                    "@type": [
917                        "SampleTerm",
918                        "OntologyTerm",
919                        "Item"
920                    ],
921                    "status": "released",
922                    "summary": "right cerebral cortex",
923                    "term_name": "right cerebral cortex"
924                },
925                {
926                    "@id": "/sample-terms/NTR_0000750/",
927                    "@type": [
928                        "SampleTerm",
929                        "OntologyTerm",
930                        "Item"
931                    ],
932                    "status": "released",
933                    "summary": "left hippocampal formation",
934                    "term_name": "left hippocampal formation"
935                },
936                {
937                    "@id": "/sample-terms/NTR_0000751/",
938                    "@type": [
939                        "SampleTerm",
940                        "OntologyTerm",
941                        "Item"
942                    ],
943                    "status": "released",
944                    "summary": "right hippocampal formation",
945                    "term_name": "right hippocampal formation"
946                },
947                {
948                    "@id": "/sample-terms/UBERON_0000948/",
949                    "@type": [
950                        "SampleTerm",
951                        "OntologyTerm",
952                        "Item"
953                    ],
954                    "status": "released",
955                    "summary": "heart",
956                    "term_name": "heart"
957                }
958            ],
959            "status": "released",
960            "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples",
961            "taxa": "Mus musculus",
962            "treatments": []
963        }
964    ],
965    "schema_version": "9",
966    "status": "released",
967    "submitted_by": {
968        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
969        "title": "Diane Trout"
970    },
971    "submitted_files_timestamp": "2025-04-06T22:28:53.963986+00:00",
972    "summary": "Parse SPLiT-seq: sparse gene count matrix",
973    "uuid": "2c79989c-4d39-4ec8-9eb6-0af6e6dbeadb",
974    "workflows": [
975        {
976            "@id": "/workflows/IGVFWF6241JYDF/",
977            "accession": "IGVFWF6241JYDF",
978            "name": "UCI snRNA-seq workflow",
979            "status": "released"
980        }
981    ]
982}