Home

IGVFDS5394QLIN

released
File Set Type
principal analysis
Summary
lentiMPRA: reporter genomic variant effects
Workflows
Publications
Samples
Homo sapiens H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron, at 7 day(s) post change, transfected with a reporter library
Protocols
Attribution
Nadav Ahituv, UCSF

Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
reporter genomic variant effects
hg19 reporter genomic variant effects
Nadav Ahituv, UCSF
121 KB
validated

File Association Graph

Loading…
File Set
File
AnalysisSet
AuxiliarySet
CuratedSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_H1
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder

MeasurementSet Input File Sets

3 items
Associated Auxiliary Sets
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library

AnalysisSet Input File Sets

1 item
Accession
Summary
lentiMPRA reporter library: barcode to element mapping

AuxiliarySet Input File Sets

3 items
Associated Measurement Sets
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder

CuratedSet Input File Sets

1 item
Accession
Summary
hg19 elements