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IGVFDS5394QLIN

released
File Set Type
principal analysis
Summary
lentiMPRA: reporter genomic variant effects
Workflows
Publications
Samples
neural progenitor cell pooled cell specimen, transfected with a reporter library
Protocols

Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
reporter genomic variant effects
reporter genomic variant effects
Nadav Ahituv, UCSF
121 KB
validated

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File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
neural progenitor pooled cell specimen, Homo sapiens transfected with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
unspecified
Homo sapiens

MeasurementSet Input File Sets

3 items
Associated Auxiliary Sets
Associated Construct Library Sets
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
neural progenitor pooled cell specimen, Homo sapiens transfected with a reporter library
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
neural progenitor pooled cell specimen, Homo sapiens transfected with a reporter library
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
neural progenitor pooled cell specimen, Homo sapiens transfected with a reporter library

AnalysisSet Input File Sets

1 item
Accession
Summary
Unspecified assay: barcode to element mapping

AuxiliarySet Input File Sets

3 items
Associated Measurement Sets
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Nadav Ahituv, UCSF