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IGVFDS5287IDYR

released
Aliases
ali-mortazavi:igvf_005_Subpool_9_total+core
File Set Type
intermediate analysis
Summary
Parse SPLiT-seq: sparse gene count matrix
Description
8 cube mouse founder strains plate igvf_005 Subpool_9 with Liver as the primary tissue and Diencephalon/Pituitary as the genetically multiplexed tissue
Workflows
Samples
Mus musculus multiplexed sample of hypothalamus, liver, pituitary gland
Protocols
Attribution
Ali Mortazavi, UCI

Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tar
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
1.6 GB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples

Donors

65 items
Aliases
  • ali-mortazavi:018_B6J_10F
female
Mus musculus
  • ali-mortazavi:041_129S1J_10M
male
Mus musculus
  • ali-mortazavi:030_AJ_10F
female
Mus musculus
  • ali-mortazavi:052_NZOJ_10F
female
Mus musculus
  • ali-mortazavi:057_WSBJ_10M
male
Mus musculus
  • ali-mortazavi:080_PWKJ_10F
female
Mus musculus
  • ali-mortazavi:069_NODJ_10M
male
Mus musculus
  • ali-mortazavi:058_WSBJ_10F
female
Mus musculus
  • ali-mortazavi:035_AJ_10M
male
Mus musculus
  • ali-mortazavi:088_CASTJ_10F
female
Mus musculus

MeasurementSet Input File Sets

1 item
Measurement Sets
Measured Samples
Parse SPLiT-seq
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples

File Sets Using This Analysis Set as an Input

2 items
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:founder_liver_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:founder_diencephalonpituitary_analysis
Ali Mortazavi, UCI

Documents

1 item
Page
Description
Type
Download
Preview
UCI/Caltech IGVF dataset pipeline report for igvf_005_Subpool_9
plate map