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IGVFDS5242AKVI

released
Aliases
ansuman-satpathy:igvf18_analysis_set_10x3
File Set Type
intermediate analysis
Summary
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Workflows
Samples
Homo sapiens multiplexed sample of HCT116, HUDEP-2, IMR-90, MCF-7, SK-N-SH, TeloHAEC, perturbed with 3 μM Yoda1 for 4 hours
Protocols

Files

5 items
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.0 GB
validation exempted
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
156 MB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.7 MB
validation exempted
tbi
index
index of IGVFFI1346BGPN
Ansuman Satpathy, Stanford
1.7 MB
validated
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
584 KB
validated

File Association Graph

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File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples

Donors

6 items
Aliases
  • igvf:donor_of_HCT116
male
Homo sapiens
  • igvf:donor_of_HUDEP-2
unspecified
Homo sapiens
  • igvf:donor_of_teloHAEC
female
Homo sapiens
  • igvf:donor_of_IMR90
female
Homo sapiens
  • igvf:donor_of_MCF7
female
Homo sapiens
  • igvf:donor_of_SKNSH
female
Homo sapiens

MeasurementSet Input File Sets

2 items
Associated Auxiliary Sets
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples

AuxiliarySet Input File Sets

1 item
Auxiliary Sets
Measured Samples
Associated Measurement Sets
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford