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IGVFDS5241INPJ

released
Aliases
tim-reddy:starr-seq-principal-analysis-set-k562-P017
File Set Type
principal analysis
Summary
SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants
Workflows
Samples
Homo sapiens K562 cell line, transfected with a reporter library
Protocols
Attribution
Tim Reddy, Duke

Files

11 items
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
8.0 GB
validated
tsv
reporter variants
GRCh38 reporter variants
Bill Majoros, Duke
24 MB
validation exempted
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
6.5 GB
validated
bai
index
index of IGVFFI0206LTOI
Tim Reddy, Duke
2.6 MB
validated
bai
index
index of IGVFFI3069YJLI
Tim Reddy, Duke
2.4 MB
validated
bai
index
index of IGVFFI8600YMGO
Tim Reddy, Duke
2.4 MB
validated
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
7.9 GB
validated
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
124 MB
validated
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
58 MB
validated
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
6.7 GB
validated

File Association Graph

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File Set
File
AnalysisSet
ConstructLibrarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_K562
female
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting random selections genome-wide

MeasurementSet Input File Sets

1 item
Measurement Sets
Measured Samples
SUPERSTARR integrating a reporter library targeting random selections genome-wide
Homo sapiens (female) K562 cell line transfected with a reporter library

ConstructLibrarySet Input File Sets

1 item
Accession
Applied To Samples
reporter library targeting random selections genome-wide
Homo sapiens (female) K562 cell line transfected with a reporter library