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IGVFDS4777NFUR

released
No limitations
Aliases
ansuman-satpathy:igvf15_analysis_set_10x2
File Set Type
intermediate analysis
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Workflows
Samples
Homo sapiens multiplexed sample of GM25256 (WTC-11)
Protocols
Attribution
Ansuman Satpathy, Stanford

Files

5 items
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
919 KB
validated
tbi
index
index of IGVFFI8609YULC
Ansuman Satpathy, Stanford
1.6 MB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.6 MB
validation exempted
tsv
fragments
fragments
Ansuman Satpathy, Stanford
4.4 GB
validation exempted
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
179 MB
validated

File Association Graph

IGVFDS2872HKZZ8 filesexperimental data8 filesIGVFFI8609YULCtsvfragmentsIGVFFI5434YOREbedpeaksIGVFFI1936IYFZtbiindexIGVFDS3345HOBS8 filesexperimental data8 filesIGVFFI9930KPDXhdf5raw feature barcode…IGVFDS3069YZFY8 fileslipid-conjugated oligo…8 filesIGVFFI0278DRTStsvcell hashing barcodes
File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

MeasurementSet Input File Sets

2 items
Associated Auxiliary Sets
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples

AuxiliarySet Input File Sets

1 item
Auxiliary Sets
Measured Samples
Associated Measurement Sets
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples