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IGVFDS4714VWGB

released
Aliases
tim-reddy:starr-seq-principal-analysis-set-k562-P009
File Set Type
principal analysis
Summary
STARR-seq integrating a reporter library targeting random selections genome-wide: alignments, index, reporter genomic variant effects, reporter variants
Workflows
Samples
Homo sapiens K562 cell line, transfected with a reporter library
Protocols
Attribution
Tim Reddy, Duke

Files

11 items
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
6.0 GB
validated
bai
index
index of IGVFFI7373KSGO
Tim Reddy, Duke
2.5 MB
validated
bai
index
index of IGVFFI6961BSUP
Tim Reddy, Duke
2.4 MB
validated
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
5.9 GB
validated
bai
index
index of IGVFFI5631FWFB
Tim Reddy, Duke
2.4 MB
validated
bai
index
index of IGVFFI2969FDGZ
Tim Reddy, Duke
2.5 MB
validated
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
5.6 GB
validated
tsv
reporter variants
GRCh38 reporter variants
Bill Majoros, Duke
21 MB
validation exempted
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
6.2 GB
validated
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
108 MB
validated

File Association Graph

IGVFDS3387GMPK2 filesreporter library2 filesIGVFFI6961BSUPbamalignmentsIGVFFI4581THVVbaiindexIGVFFI5631FWFBbamalignmentsIGVFFI6065FGUVbaiindexIGVFFI7284AQCItsvreporter variantsIGVFFI8384ELUEtsvreporter genomic…IGVFFI9378WHVVtsvreporter genomic…IGVFDS3499EXHQ2 filesexperimental data2 filesIGVFFI2969FDGZbamalignmentsIGVFFI6712QAFIbaiindexIGVFFI7373KSGObamalignmentsIGVFFI3928HQNVbaiindex
File Set
File
AnalysisSet
ConstructLibrarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_K562
female
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting random selections genome-wide

MeasurementSet Input File Sets

1 item
Measurement Sets
Measured Samples
STARR-seq integrating a reporter library targeting random selections genome-wide
Homo sapiens (female) K562 cell line transfected with a reporter library

ConstructLibrarySet Input File Sets

1 item
Accession
Applied To Samples
reporter library targeting random selections genome-wide
Homo sapiens (female) K562 cell line transfected with a reporter library