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AnalysisSet
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IGVFDS4681TSQU
IGVFDS4681TSQU
released
Json view
Aliases
buenrostro-bernstein:AnalysisSet_BioSam-4965_SS-PKR-435
File Set Type
intermediate analysis
Summary
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
Samples
Mus musculus brain tissue, cellular sub pool(s): SS-PKR 435
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Files
6 items
Accession
File Format
Content Type
Summary
Lab
File Size
Workflow
Uniform Pipeline
Upload Status
IGVFFI0035TUYI
tar
kallisto single cell RNAseq output
unfiltered cell by gene in kallisto single cell RNAseq output
Jason Buenrostro, Broad
6.1 GB
igvf single cell uniform pipeline
uniformly processed
validated
IGVFFI3527QKGP
tbi
index
index of IGVFFI6974VPAB
Jason Buenrostro, Broad
863 KB
igvf single cell uniform pipeline
uniformly processed
validated
IGVFFI4228AGRI
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
20 GB
igvf single cell uniform pipeline
uniformly processed
validated
IGVFFI5643DMQY
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
951 MB
igvf single cell uniform pipeline
uniformly processed
validated
IGVFFI6974PJQH
bai
index
index of IGVFFI4228AGRI
Jason Buenrostro, Broad
5.3 MB
igvf single cell uniform pipeline
uniformly processed
validated
IGVFFI6974VPAB
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
1.4 GB
igvf single cell uniform pipeline
uniformly processed
validated
File Association Graph
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File Set
File
AnalysisSet
MeasurementSet
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4121TWUU
Tissue
brain
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 435)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO9446AKYF
buenrostro-bernstein:Donor 2047
unspecified
Mus musculus
MeasurementSet Input File Sets
Show aliases columns
2 items
Measurement Sets
Measured Samples
IGVFDS8225URBF
single-cell ATAC-seq (SHARE-seq)
IGVFSM4121TWUU
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 435)
IGVFDS1592MBRQ
single-cell RNA sequencing assay (SHARE-seq)
IGVFSM4121TWUU
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 435)