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IGVFDS4606DSTJ

released
Aliases
charles-gersbach:analysis-set-bulk-atac-count
File Set Type
intermediate analysis
Summary
ATAC-seq: alignments
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, antagonized with treatment(s)
Protocols

Files

6 items
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
3.3 GB
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
3.0 GB
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
1.9 GB
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
1.3 GB
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
3.5 GB
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
5.0 GB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

6 items
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens

Donors

1 item
Accession
Aliases
Sex
Taxa
  • charles-gersbach:human-donor-WTC11
male
Homo sapiens

MeasurementSet Input File Sets

6 items
Controls
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days

File Sets Using This Analysis Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
ATAC-seq: fold change over control, peak quantifications
  • charles-gersbach:analysis-set-bulk-atac-DEanalysis
Charles Gersbach, Duke

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke