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IGVFDS4526ROPM

released
Aliases
charles-gersbach:analysis-set-crispra-control-0umETt1-ipsc-cm-targeted-hicar-rep1-cool
File Set Type
intermediate analysis
Summary
HiCAR: contact matrix
Workflows
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
Protocols

Files

2 items
cool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
9.1 MB
validated
mcool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
41 MB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
non-targeting guide (sgRNA) library

MeasurementSet Input File Sets

1 item
Measurement Sets
Measured Samples
CRISPR HiCAR integrating a non-targeting guide (sgRNA) library
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library

File Sets Using This Analysis Set as an Input

2 items
AnalysisSet
HiCAR: bin paired count, differential chromatin contact quantifications
  • charles-gersbach:analysis-set-crispra-stim-ctrl-NT-DEanalysis
Charles Gersbach, Duke
AnalysisSet
HiCAR: bin paired count, differential chromatin contact quantifications
  • charles-gersbach:analysis-set-crispra-ctrl-NT-region3-DEanalysis
Charles Gersbach, Duke

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke