{
"@context": "/terms/",
"@id": "/analysis-sets/IGVFDS4359OODY/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4359OODY",
"aliases": [
"jesse-engreitz:PPIF_promoter_Enformer_edits_THP1_Variant-FlowFISH_analysis"
],
"assay_titles": [
"Variant FlowFISH"
],
"audit": {
"ERROR": [
{
"category": "upload status not validated",
"detail": "Tabular file [IGVFFI2771ITOG](/tabular-files/IGVFFI2771ITOG/) has `upload_status` invalidated. Validation error detail: {\"md5sum\": \"original md5sum c4999fe86bccd7f9a63f52a90218b332 does not match newly calculated md5sum c5af1e42cb7727873a6334cb5025b976.\", \"tabular_file_error\": [[149, 6, \"type-error\", \"type is \\\"number/default\\\"\"], [149, 7, \"type-error\", \"type is \\\"number/default\\\"\"], [165, 4, \"type-error\", \"type is \\\"number/default\\\"\"], [165, 5, \"type-error\", \"type is \\\"number/default\\\"\"], [165, 6, \"type-error\", \"type is \\\"number/default\\\"\"], [165, 7, \"type-error\", \"type is \\\"number/default\\\"\"], [165, 9, \"type-error\", \"type is \\\"number/default\\\"\"]]}. Files are expected to be validated.",
"level": 60,
"level_name": "ERROR",
"name": "audit_upload_status",
"path": "/tabular-files/IGVFFI2771ITOG/"
},
{
"category": "unexpected input file set",
"detail": "Analysis set [IGVFDS4359OODY](/analysis-sets/IGVFDS4359OODY/) links to file set(s): [IGVFDS6957VHOD](/measurement-sets/IGVFDS6957VHOD/), [IGVFDS2247EEVD](/measurement-sets/IGVFDS2247EEVD/), [IGVFDS0176OXWE](/measurement-sets/IGVFDS0176OXWE/), [IGVFDS3326NVFS](/measurement-sets/IGVFDS3326NVFS/), [IGVFDS3765SWWC](/measurement-sets/IGVFDS3765SWWC/), [IGVFDS3292ERTL](/measurement-sets/IGVFDS3292ERTL/), [IGVFDS2294QFQV](/measurement-sets/IGVFDS2294QFQV/), [IGVFDS2337XGGI](/measurement-sets/IGVFDS2337XGGI/), [IGVFDS0649NZHX](/measurement-sets/IGVFDS0649NZHX/), [IGVFDS8499AVHV](/measurement-sets/IGVFDS8499AVHV/), [IGVFDS5338RAZZ](/measurement-sets/IGVFDS5338RAZZ/), [IGVFDS9880SAMJ](/measurement-sets/IGVFDS9880SAMJ/), [IGVFDS6266PDNX](/measurement-sets/IGVFDS6266PDNX/), [IGVFDS7998ZPYH](/measurement-sets/IGVFDS7998ZPYH/), [IGVFDS8099KDSE](/measurement-sets/IGVFDS8099KDSE/), [IGVFDS2940LDCT](/measurement-sets/IGVFDS2940LDCT/), [IGVFDS6252SSYB](/measurement-sets/IGVFDS6252SSYB/), [IGVFDS6384OLQB](/measurement-sets/IGVFDS6384OLQB/), [IGVFDS8933DNXM](/measurement-sets/IGVFDS8933DNXM/), [IGVFDS3508UNRE](/measurement-sets/IGVFDS3508UNRE/), [IGVFDS4825MNUM](/measurement-sets/IGVFDS4825MNUM/), [IGVFDS5795QOPU](/measurement-sets/IGVFDS5795QOPU/), [IGVFDS7805IFYA](/measurement-sets/IGVFDS7805IFYA/), [IGVFDS8163FWZM](/measurement-sets/IGVFDS8163FWZM/), [IGVFDS7230BLHQ](/measurement-sets/IGVFDS7230BLHQ/), [IGVFDS5128CXIS](/measurement-sets/IGVFDS5128CXIS/), [IGVFDS7100AAFY](/measurement-sets/IGVFDS7100AAFY/), [IGVFDS4607VBYI](/measurement-sets/IGVFDS4607VBYI/), [IGVFDS4363PDBQ](/measurement-sets/IGVFDS4363PDBQ/), [IGVFDS9381QGYL](/measurement-sets/IGVFDS9381QGYL/), [IGVFDS4188FAAP](/measurement-sets/IGVFDS4188FAAP/), [IGVFDS7957LQTQ](/measurement-sets/IGVFDS7957LQTQ/), [IGVFDS6069DTLX](/measurement-sets/IGVFDS6069DTLX/), [IGVFDS9395LATB](/measurement-sets/IGVFDS9395LATB/), [IGVFDS4141QOFR](/measurement-sets/IGVFDS4141QOFR/), [IGVFDS4811UOUL](/measurement-sets/IGVFDS4811UOUL/), [IGVFDS7378QBUS](/measurement-sets/IGVFDS7378QBUS/), [IGVFDS5989CMGV](/measurement-sets/IGVFDS5989CMGV/), [IGVFDS0872DEIB](/measurement-sets/IGVFDS0872DEIB/), [IGVFDS0839SQRJ](/measurement-sets/IGVFDS0839SQRJ/), [IGVFDS9275AQHE](/measurement-sets/IGVFDS9275AQHE/) in `input_file_sets` that are not represented in the `derived_from` of the file sets of the files in this analysis. The analysis set input files are expected to belong to the input file sets.",
"level": 60,
"level_name": "ERROR",
"name": "audit_input_file_sets_derived_from",
"path": "/analysis-sets/IGVFDS4359OODY/"
}
],
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM4690OPZT](/in-vitro-systems/IGVFSM4690OPZT/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM4690OPZT/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM9842JQYY](/in-vitro-systems/IGVFSM9842JQYY/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9842JQYY/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM8654CBKP](/in-vitro-systems/IGVFSM8654CBKP/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM8654CBKP/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2020MZIU](/in-vitro-systems/IGVFSM2020MZIU/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2020MZIU/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5640BXQI](/in-vitro-systems/IGVFSM5640BXQI/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5640BXQI/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0390WQRT](/in-vitro-systems/IGVFSM0390WQRT/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0390WQRT/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6784MZOT](/in-vitro-systems/IGVFSM6784MZOT/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6784MZOT/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3068WOLM](/in-vitro-systems/IGVFSM3068WOLM/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3068WOLM/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM1225BLTJ](/in-vitro-systems/IGVFSM1225BLTJ/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1225BLTJ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6600KXOT](/in-vitro-systems/IGVFSM6600KXOT/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6600KXOT/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5250NIMK](/in-vitro-systems/IGVFSM5250NIMK/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5250NIMK/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM8589BNCG](/in-vitro-systems/IGVFSM8589BNCG/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM8589BNCG/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0117NVHQ](/in-vitro-systems/IGVFSM0117NVHQ/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0117NVHQ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0259SMPF](/in-vitro-systems/IGVFSM0259SMPF/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0259SMPF/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM4241GNFT](/in-vitro-systems/IGVFSM4241GNFT/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM4241GNFT/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM1676ETUI](/in-vitro-systems/IGVFSM1676ETUI/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1676ETUI/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3374KKBT](/in-vitro-systems/IGVFSM3374KKBT/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3374KKBT/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2557IAGR](/in-vitro-systems/IGVFSM2557IAGR/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2557IAGR/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5533UPOD](/in-vitro-systems/IGVFSM5533UPOD/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5533UPOD/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM1406ICND](/in-vitro-systems/IGVFSM1406ICND/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1406ICND/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0425HXKG](/in-vitro-systems/IGVFSM0425HXKG/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0425HXKG/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2175KOEY](/in-vitro-systems/IGVFSM2175KOEY/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2175KOEY/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0694FDBK](/in-vitro-systems/IGVFSM0694FDBK/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0694FDBK/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6859MCDG](/in-vitro-systems/IGVFSM6859MCDG/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6859MCDG/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6196LFWY](/in-vitro-systems/IGVFSM6196LFWY/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6196LFWY/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3467IDCX](/in-vitro-systems/IGVFSM3467IDCX/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3467IDCX/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6825VUYA](/in-vitro-systems/IGVFSM6825VUYA/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6825VUYA/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5208LYWU](/in-vitro-systems/IGVFSM5208LYWU/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5208LYWU/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6168MZCU](/in-vitro-systems/IGVFSM6168MZCU/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6168MZCU/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM7963WTMN](/in-vitro-systems/IGVFSM7963WTMN/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7963WTMN/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM4794HUBP](/in-vitro-systems/IGVFSM4794HUBP/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM4794HUBP/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM7747OPJP](/in-vitro-systems/IGVFSM7747OPJP/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7747OPJP/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM4346QVBF](/in-vitro-systems/IGVFSM4346QVBF/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM4346QVBF/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2170CHPM](/in-vitro-systems/IGVFSM2170CHPM/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2170CHPM/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3864UXYU](/in-vitro-systems/IGVFSM3864UXYU/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3864UXYU/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM8731UBTA](/in-vitro-systems/IGVFSM8731UBTA/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM8731UBTA/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM7022AZSZ](/in-vitro-systems/IGVFSM7022AZSZ/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7022AZSZ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM1008GZTD](/in-vitro-systems/IGVFSM1008GZTD/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1008GZTD/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3122QCVP](/in-vitro-systems/IGVFSM3122QCVP/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3122QCVP/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0890ULSF](/in-vitro-systems/IGVFSM0890ULSF/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0890ULSF/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing file format specifications",
"detail": "Tabular file [IGVFFI2771ITOG](/tabular-files/IGVFFI2771ITOG/) has no `file_format_specifications`. Tabular files are expected to link to a file format specifications document describing the headers of the file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_tabular_file_no_file_format_specifications",
"path": "/tabular-files/IGVFFI2771ITOG/"
}
],
"WARNING": [
{
"category": "missing analysis step version",
"detail": "Analysis set [IGVFDS4359OODY](/analysis-sets/IGVFDS4359OODY/) links to file(s) [IGVFFI2771ITOG](/tabular-files/IGVFFI2771ITOG/) that are missing `analysis_step_version`. Analysis set files are expected to specify analysis step version.",
"level": 40,
"level_name": "WARNING",
"name": "audit_analysis_set_files_missing_analysis_step_version",
"path": "/analysis-sets/IGVFDS4359OODY/"
},
{
"category": "missing derived from",
"detail": "Analysis set [IGVFDS4359OODY](/analysis-sets/IGVFDS4359OODY/) links to file(s) [IGVFFI2771ITOG](/tabular-files/IGVFFI2771ITOG/) that have no `derived_from`. Files in an analysis set are expected to be derived from other files.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_file_sets_derived_from",
"path": "/analysis-sets/IGVFDS4359OODY/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_for": [],
"creation_timestamp": "2023-12-16T21:03:31.310002+00:00",
"description": "Analysis of PPIF promoter Enformer-designed edit effects on PPIF expression that were measured by Variant-FlowFISH in THP-1 cells.",
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"file_set_type": "principal analysis",
"files": [
{
"@id": "/tabular-files/IGVFFI2771ITOG/",
"accession": "IGVFFI2771ITOG",
"aliases": [
"jesse-engreitz:PPIF_promoter_Enformer_edits_THP1_Variant-FlowFISH_variant_effects_file"
],
"content_type": "variant effects",
"creation_timestamp": "2024-09-14T02:30:35.313372+00:00",
"file_format": "tsv",
"file_size": 11014,
"href": "/tabular-files/IGVFFI2771ITOG/@@download/IGVFFI2771ITOG.tsv.gz",
"s3_uri": "s3://igvf-files/2024/09/14/aedfe16a-8d75-4283-a768-9c966538e894/IGVFFI2771ITOG.tsv.gz",
"submitted_file_name": "PPIF_promoter_Enformer_edits_THP1_AllelicEffectsStats.tsv.gz",
"upload_status": "invalidated"
}
],
"functional_assay_mechanisms": [],
"input_file_set_for": [],
"input_file_sets": [
{
"@id": "/measurement-sets/IGVFDS5128CXIS/",
"accession": "IGVFDS5128CXIS",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS9395LATB/",
"accession": "IGVFDS9395LATB",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinA_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS0649NZHX/",
"accession": "IGVFDS0649NZHX",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinB_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS9381QGYL/",
"accession": "IGVFDS9381QGYL",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS9275AQHE/",
"accession": "IGVFDS9275AQHE",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinD_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS2337XGGI/",
"accession": "IGVFDS2337XGGI",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-FACS_Input_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS5795QOPU/",
"accession": "IGVFDS5795QOPU",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS7378QBUS/",
"accession": "IGVFDS7378QBUS",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinB_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS4607VBYI/",
"accession": "IGVFDS4607VBYI",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinC_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS7805IFYA/",
"accession": "IGVFDS7805IFYA",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinD_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS6266PDNX/",
"accession": "IGVFDS6266PDNX",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-FACS_Input_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS3292ERTL/",
"accession": "IGVFDS3292ERTL",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinA_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS8933DNXM/",
"accession": "IGVFDS8933DNXM",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinB_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS2940LDCT/",
"accession": "IGVFDS2940LDCT",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinC_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS7230BLHQ/",
"accession": "IGVFDS7230BLHQ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinD_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS4811UOUL/",
"accession": "IGVFDS4811UOUL",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-FACS_Input_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS7998ZPYH/",
"accession": "IGVFDS7998ZPYH",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep4-BinA_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS6069DTLX/",
"accession": "IGVFDS6069DTLX",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep4-BinB_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS8163FWZM/",
"accession": "IGVFDS8163FWZM",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep4-BinC_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS5989CMGV/",
"accession": "IGVFDS5989CMGV",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep4-BinD_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS4188FAAP/",
"accession": "IGVFDS4188FAAP",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep4-FACS_Input_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS3508UNRE/",
"accession": "IGVFDS3508UNRE",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinA_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS0176OXWE/",
"accession": "IGVFDS0176OXWE",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinB_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS5338RAZZ/",
"accession": "IGVFDS5338RAZZ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinC_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS8099KDSE/",
"accession": "IGVFDS8099KDSE",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinD_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS8499AVHV/",
"accession": "IGVFDS8499AVHV",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-FACS_Input_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS4363PDBQ/",
"accession": "IGVFDS4363PDBQ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS9880SAMJ/",
"accession": "IGVFDS9880SAMJ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS0872DEIB/",
"accession": "IGVFDS0872DEIB",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinC_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS6957VHOD/",
"accession": "IGVFDS6957VHOD",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinD_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS7100AAFY/",
"accession": "IGVFDS7100AAFY",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS4141QOFR/",
"accession": "IGVFDS4141QOFR",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinA_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS6252SSYB/",
"accession": "IGVFDS6252SSYB",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinB_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS0839SQRJ/",
"accession": "IGVFDS0839SQRJ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS6384OLQB/",
"accession": "IGVFDS6384OLQB",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinD_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS2294QFQV/",
"accession": "IGVFDS2294QFQV",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS3765SWWC/",
"accession": "IGVFDS3765SWWC",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinA_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS3326NVFS/",
"accession": "IGVFDS3326NVFS",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinB_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS2247EEVD/",
"accession": "IGVFDS2247EEVD",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinC_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS7957LQTQ/",
"accession": "IGVFDS7957LQTQ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinD_AmpliconSequencing"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS4825MNUM/",
"accession": "IGVFDS4825MNUM",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-FACS_Input_AmpliconSequencing"
],
"file_set_type": "experimental data"
}
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "This object's file_set_type was primary analysis and has been updated to be principal analysis.",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:11:51.544914+00:00",
"sample_summary": "THP-1 cell line, modified with a guide library, sorted on expression of PPIF",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM3211UEWZ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3211UEWZ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl"
],
"classifications": [
"cell line"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3374KKBT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3374KKBT",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6784MZOT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6784MZOT",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinB"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2175KOEY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2175KOEY",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5208LYWU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5208LYWU",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinD"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0390WQRT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0390WQRT",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-FACS_Input"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1676ETUI/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1676ETUI",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3068WOLM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3068WOLM",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinB"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8654CBKP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8654CBKP",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinC"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2020MZIU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2020MZIU",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinD"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8731UBTA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8731UBTA",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-FACS_Input"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8589BNCG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8589BNCG",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM4794HUBP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4794HUBP",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinB"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3122QCVP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3122QCVP",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinC"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6168MZCU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6168MZCU",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinD"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM4241GNFT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4241GNFT",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-FACS_Input"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7747OPJP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7747OPJP",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep4-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6825VUYA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6825VUYA",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep4-BinB"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1008GZTD/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1008GZTD",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep4-BinC"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM4690OPZT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4690OPZT",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep4-BinD"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2170CHPM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2170CHPM",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep4-FACS_Input"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1225BLTJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1225BLTJ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0694FDBK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0694FDBK",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinB"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3864UXYU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3864UXYU",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinC"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5640BXQI/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5640BXQI",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinD"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6600KXOT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6600KXOT",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-FACS_Input"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7022AZSZ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7022AZSZ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0425HXKG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0425HXKG",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinB"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3467IDCX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3467IDCX",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinC"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0117NVHQ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0117NVHQ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinD"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5250NIMK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5250NIMK",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0259SMPF/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0259SMPF",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9842JQYY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9842JQYY",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinB"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0890ULSF/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0890ULSF",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7963WTMN/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7963WTMN",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinD"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6859MCDG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6859MCDG",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2557IAGR/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2557IAGR",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6196LFWY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6196LFWY",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinB"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1406ICND/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1406ICND",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinC"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM4346QVBF/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4346QVBF",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinD"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5533UPOD/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5533UPOD",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-FACS_Input"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS2385DHZO/"
],
"modifications": [
"/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens modified with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "8",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-09-14T02:30:35.313372+00:00",
"submitter_comment": "Analysis of PPIF promoter Enformer-designed edit effects on PPIF expression that were measured by Variant-FlowFISH in THP-1 cells.",
"summary": "principal analysis of Variant FlowFISH data",
"uuid": "889b8eff-249a-4102-82af-39f873ec14be"
}