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IGVFDS3636WTST

released
Aliases
ali-mortazavi:IGVF_B01_subpool_6
File Set Type
intermediate analysis
Summary
Parse SPLiT-seq: sparse gene count matrix
Samples
left cerebral cortex multiplexed sample
Protocols

Files

2 items
tar
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
435 MB
validated
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
1.1 GB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples

Donors

8 items
Aliases
  • ali-mortazavi:108_CASTJ_10F
female
Mus musculus
  • ali-mortazavi:105_CASTJ_10M
male
Mus musculus
  • ali-mortazavi:119_B6J_10M
male
Mus musculus
  • ali-mortazavi:107_CASTJ_10M
male
Mus musculus
  • ali-mortazavi:117_B6J_10M
male
Mus musculus
  • ali-mortazavi:118_B6J_10F
female
Mus musculus
  • ali-mortazavi:106_CASTJ_10F
female
Mus musculus
  • ali-mortazavi:120_B6J_10F
female
Mus musculus

MeasurementSet Input File Sets

1 item
Measurement Sets
Measured Samples
Parse SPLiT-seq
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples

File Sets Using This Analysis Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:IGVF_B01_LeftCortex
Ali Mortazavi, UCI

Documents

1 item
Page
Description
Type
Download
Preview
UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_subpool_6
plate map

Attribution

Award
HG012077
Principal Investigator(s)
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI