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IGVFDS3516UQYJ

released
Aliases
ali-mortazavi:igvf_015_Subpool_UDI26_total+core
File Set Type
intermediate analysis
Summary
Parse SPLiT-seq: sparse gene count matrix
Description
8 cube mouse founder strains plate igvf_015 Subpool_UDI26 with Cortex/Hippocampus, Diencephalon/Pituitary, Heart, Liver, Kidney, Gastrocnemius, Adrenal gland, Gonads, PBMC as the tissue
Workflows
Samples
Mus musculus multiplexed sample of adrenal gland, epididymis, gastrocnemius, heart, hypothalamus, kidney, left cerebral cortex, left hippocampal formation, liver, ovary, oviduct, peripheral blood mononuclear cell, pituitary gland, testis
Protocols
Attribution
Ali Mortazavi, UCI

Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tar
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
958 MB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples

Donors

10 items
Aliases
  • ali-mortazavi:239_TREM2_10M
male
Mus musculus
  • ali-mortazavi:245_TREM2_10M
male
Mus musculus
  • ali-mortazavi:240_TREM2_10F
female
Mus musculus
  • ali-mortazavi:250_TREM2_10F
female
Mus musculus
  • ali-mortazavi:242_TREM2_10F
female
Mus musculus
  • ali-mortazavi:241_TREM2_10M
male
Mus musculus
  • ali-mortazavi:248_TREM2_10F
female
Mus musculus
  • ali-mortazavi:243_TREM2_10M
male
Mus musculus
  • ali-mortazavi:244_TREM2_10F
female
Mus musculus
  • ali-mortazavi:247_TREM2_10M
male
Mus musculus

MeasurementSet Input File Sets

1 item
Measurement Sets
Measured Samples
Parse SPLiT-seq
multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples

File Sets Using This Analysis Set as an Input

10 items
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:trem2_adrenal_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:trem2_diencephalonpituitary_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:trem2_gonadsfemale_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:trem2_cortexhippocampus_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:trem2_liver_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:trem2_pbmc_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:trem2_kidney_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:trem2_heart_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:trem2_gonadsmale_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:trem2_gastrocnemius_analysis
Ali Mortazavi, UCI

Documents

1 item
Page
Description
Type
Download
Preview
UCI/Caltech IGVF dataset pipeline report for igvf_015_Subpool_UDI26
plate map