IGVFDS3461ZPPS

released
{
    "@context": "/terms/",
    "@id": "/analysis-sets/IGVFDS3461ZPPS/",
    "@type": [
        "AnalysisSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS3461ZPPS",
    "aliases": [
        "charles-gersbach:analysis-set-bulk-rna-DEanalysis"
    ],
    "assay_titles": [
        "RNA-seq"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released alignment file [IGVFFI4212KOFH](/alignment-files/IGVFFI4212KOFH/) has in progress subobject reference file [IGVFFI7213AWAM](/reference-files/IGVFFI7213AWAM/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/alignment-files/IGVFFI4212KOFH/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM7542AMUP](/in-vitro-systems/IGVFSM7542AMUP/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM7542AMUP/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM7851SPEI](/in-vitro-systems/IGVFSM7851SPEI/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM7851SPEI/"
            },
            {
                "category": "mismatched status",
                "detail": "Released alignment file [IGVFFI9652UDZR](/alignment-files/IGVFFI9652UDZR/) has in progress subobject reference file [IGVFFI7213AWAM](/reference-files/IGVFFI7213AWAM/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/alignment-files/IGVFFI9652UDZR/"
            },
            {
                "category": "missing publication",
                "detail": "Analysis set [IGVFDS3461ZPPS](/analysis-sets/IGVFDS3461ZPPS/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_file_set_missing_publication",
                "path": "/analysis-sets/IGVFDS3461ZPPS/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM9734OHZN](/in-vitro-systems/IGVFSM9734OHZN/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM9734OHZN/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM2298AOEQ](/in-vitro-systems/IGVFSM2298AOEQ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM2298AOEQ/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM6721GJUT](/in-vitro-systems/IGVFSM6721GJUT/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM6721GJUT/"
            },
            {
                "category": "mismatched status",
                "detail": "Released alignment file [IGVFFI1384MWUS](/alignment-files/IGVFFI1384MWUS/) has in progress subobject reference file [IGVFFI7213AWAM](/reference-files/IGVFFI7213AWAM/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/alignment-files/IGVFFI1384MWUS/"
            },
            {
                "category": "mismatched status",
                "detail": "Released alignment file [IGVFFI8503OKYN](/alignment-files/IGVFFI8503OKYN/) has in progress subobject reference file [IGVFFI7213AWAM](/reference-files/IGVFFI7213AWAM/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/alignment-files/IGVFFI8503OKYN/"
            },
            {
                "category": "mismatched status",
                "detail": "Released alignment file [IGVFFI9276XTDU](/alignment-files/IGVFFI9276XTDU/) has in progress subobject reference file [IGVFFI7213AWAM](/reference-files/IGVFFI7213AWAM/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/alignment-files/IGVFFI9276XTDU/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM9140ULKM](/in-vitro-systems/IGVFSM9140ULKM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM9140ULKM/"
            },
            {
                "category": "mismatched status",
                "detail": "Released alignment file [IGVFFI4143PXEA](/alignment-files/IGVFFI4143PXEA/) has in progress subobject reference file [IGVFFI7213AWAM](/reference-files/IGVFFI7213AWAM/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/alignment-files/IGVFFI4143PXEA/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG012053/",
        "component": "functional characterization",
        "contact_pi": {
            "@id": "/users/5d329c0e-3ea9-49bf-9bb9-844a53a882c0/",
            "title": "Charles Gersbach"
        },
        "title": "High-Throughput Functional Annotation of Gene Regulatory Elements and Variants Critical to Complex Cellular Phenotypes"
    },
    "control_for": [],
    "controlled_access": false,
    "creation_timestamp": "2024-10-25T22:48:02.114763+00:00",
    "data_use_limitation_summaries": [
        "No limitations"
    ],
    "donors": [
        {
            "@id": "/human-donors/IGVFDO1756PPKO/",
            "accession": "IGVFDO1756PPKO",
            "aliases": [
                "igvf:donor_of_WTC11"
            ],
            "sex": "male",
            "status": "released",
            "taxa": "Homo sapiens"
        }
    ],
    "file_set_type": "principal analysis",
    "files": [
        {
            "@id": "/tabular-files/IGVFFI9384YMLX/",
            "accession": "IGVFFI9384YMLX",
            "aliases": [
                "charles-gersbach:tabular-file-bulk-rna-count"
            ],
            "assembly": "GRCh38",
            "content_type": "transcript quantifications",
            "controlled_access": false,
            "creation_timestamp": "2024-10-24T17:16:51.749977+00:00",
            "file_format": "tsv",
            "file_size": 565376,
            "href": "/tabular-files/IGVFFI9384YMLX/@@download/IGVFFI9384YMLX.tsv.gz",
            "s3_uri": "s3://igvf-files/2024/10/24/c36d0f0f-7d1d-42ac-9d59-c1b0a39d3c7e/IGVFFI9384YMLX.tsv.gz",
            "status": "released",
            "submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/RNA/rnaseq_counts.tsv.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/tabular-files/IGVFFI4480KZFW/",
            "accession": "IGVFFI4480KZFW",
            "aliases": [
                "charles-gersbach:tabular-file-bulk-rna-DEanalysis"
            ],
            "assembly": "GRCh38",
            "content_type": "fold change over control",
            "controlled_access": false,
            "creation_timestamp": "2024-10-28T13:51:17.373222+00:00",
            "file_format": "csv",
            "file_size": 780291,
            "href": "/tabular-files/IGVFFI4480KZFW/@@download/IGVFFI4480KZFW.csv.gz",
            "s3_uri": "s3://igvf-files/2024/10/28/9e7a4c9c-e78a-4302-af67-c4a177edd021/IGVFFI4480KZFW.csv.gz",
            "status": "released",
            "submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/RNA/corrected_rnaseq_DE_analysis.csv.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/alignment-files/IGVFFI9652UDZR/",
            "accession": "IGVFFI9652UDZR",
            "aliases": [
                "charles-gersbach:alignment-set-bulk-rna-chir4um-ipsc-cm-rep2"
            ],
            "assembly": "GRCh38",
            "content_type": "transcriptome alignments",
            "controlled_access": false,
            "creation_timestamp": "2024-10-25T19:38:23.596345+00:00",
            "file_format": "bam",
            "file_size": 2614715634,
            "href": "/alignment-files/IGVFFI9652UDZR/@@download/IGVFFI9652UDZR.bam",
            "s3_uri": "s3://igvf-files/2024/10/25/605d0d75-32b3-4bcb-9b89-06d0dc23c401/IGVFFI9652UDZR.bam",
            "status": "released",
            "submitted_file_name": "/datacommons/gersbachlab/Ruhi/IGVFdatasubmission/TaylorHiCAR/RNA/chir4um.2.rna.star2.Aligned.out.sorted.bam",
            "upload_status": "validated"
        },
        {
            "@id": "/alignment-files/IGVFFI4143PXEA/",
            "accession": "IGVFFI4143PXEA",
            "aliases": [
                "charles-gersbach:alignment-set-bulk-rna-control-ipsc-cm-rep2"
            ],
            "assembly": "GRCh38",
            "content_type": "transcriptome alignments",
            "controlled_access": false,
            "creation_timestamp": "2024-10-25T19:38:27.044500+00:00",
            "file_format": "bam",
            "file_size": 2818065459,
            "href": "/alignment-files/IGVFFI4143PXEA/@@download/IGVFFI4143PXEA.bam",
            "s3_uri": "s3://igvf-files/2024/10/25/e68506fe-7151-4f96-8d74-5dcc8e50da44/IGVFFI4143PXEA.bam",
            "status": "released",
            "submitted_file_name": "/datacommons/gersbachlab/Ruhi/IGVFdatasubmission/TaylorHiCAR/RNA/control.2.rna.star2.Aligned.out.sorted.bam",
            "upload_status": "validated"
        },
        {
            "@id": "/alignment-files/IGVFFI1384MWUS/",
            "accession": "IGVFFI1384MWUS",
            "aliases": [
                "charles-gersbach:alignment-set-bulk-rna-chir4um-ipsc-cm-rep1"
            ],
            "assembly": "GRCh38",
            "content_type": "transcriptome alignments",
            "controlled_access": false,
            "creation_timestamp": "2024-10-25T19:38:21.274556+00:00",
            "file_format": "bam",
            "file_size": 2787394611,
            "href": "/alignment-files/IGVFFI1384MWUS/@@download/IGVFFI1384MWUS.bam",
            "s3_uri": "s3://igvf-files/2024/10/25/73bb9c90-12c4-46cd-a1b2-bd4143356678/IGVFFI1384MWUS.bam",
            "status": "released",
            "submitted_file_name": "/datacommons/gersbachlab/Ruhi/IGVFdatasubmission/TaylorHiCAR/RNA/chir4um.1.rna.star2.Aligned.out.sorted.bam",
            "upload_status": "validated"
        },
        {
            "@id": "/alignment-files/IGVFFI4212KOFH/",
            "accession": "IGVFFI4212KOFH",
            "aliases": [
                "charles-gersbach:alignment-set-bulk-rna-control-ipsc-cm-rep3"
            ],
            "assembly": "GRCh38",
            "content_type": "transcriptome alignments",
            "controlled_access": false,
            "creation_timestamp": "2024-10-25T19:38:28.526271+00:00",
            "file_format": "bam",
            "file_size": 2712173924,
            "href": "/alignment-files/IGVFFI4212KOFH/@@download/IGVFFI4212KOFH.bam",
            "s3_uri": "s3://igvf-files/2024/10/25/dd284924-b401-4162-a13e-308f7e82a38b/IGVFFI4212KOFH.bam",
            "status": "released",
            "submitted_file_name": "/datacommons/gersbachlab/Ruhi/IGVFdatasubmission/TaylorHiCAR/RNA/control.3.rna.star2.Aligned.out.sorted.bam",
            "upload_status": "validated"
        },
        {
            "@id": "/alignment-files/IGVFFI9276XTDU/",
            "accession": "IGVFFI9276XTDU",
            "aliases": [
                "charles-gersbach:alignment-set-bulk-rna-control-ipsc-cm-rep1"
            ],
            "assembly": "GRCh38",
            "content_type": "transcriptome alignments",
            "controlled_access": false,
            "creation_timestamp": "2024-10-25T19:38:26.017514+00:00",
            "file_format": "bam",
            "file_size": 2564801580,
            "href": "/alignment-files/IGVFFI9276XTDU/@@download/IGVFFI9276XTDU.bam",
            "s3_uri": "s3://igvf-files/2024/10/25/c3f52525-5d58-43e0-b502-ab3f7cbb1b30/IGVFFI9276XTDU.bam",
            "status": "released",
            "submitted_file_name": "/datacommons/gersbachlab/Ruhi/IGVFdatasubmission/TaylorHiCAR/RNA/control.1.rna.star2.Aligned.out.sorted.bam",
            "upload_status": "validated"
        },
        {
            "@id": "/alignment-files/IGVFFI8503OKYN/",
            "accession": "IGVFFI8503OKYN",
            "aliases": [
                "charles-gersbach:alignment-set-bulk-rna-chir4um-ipsc-cm-rep3"
            ],
            "assembly": "GRCh38",
            "content_type": "transcriptome alignments",
            "controlled_access": false,
            "creation_timestamp": "2024-10-25T19:38:24.771681+00:00",
            "file_format": "bam",
            "file_size": 2481896958,
            "href": "/alignment-files/IGVFFI8503OKYN/@@download/IGVFFI8503OKYN.bam",
            "s3_uri": "s3://igvf-files/2024/10/25/c48ab6b3-a377-4f96-a3ab-9b1d25bb7d19/IGVFFI8503OKYN.bam",
            "status": "released",
            "submitted_file_name": "/datacommons/gersbachlab/Ruhi/IGVFdatasubmission/TaylorHiCAR/RNA/chir4um.3.rna.star2.Aligned.out.sorted.bam",
            "upload_status": "validated"
        }
    ],
    "functional_assay_mechanisms": [],
    "input_file_sets": [
        {
            "@id": "/measurement-sets/IGVFDS9314PRMO/",
            "accession": "IGVFDS9314PRMO",
            "aliases": [
                "charles-gersbach:measurement-set-bulk-rna-chir4um-ipsc-cm-rep1"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS6712YMBV/",
            "accession": "IGVFDS6712YMBV",
            "aliases": [
                "charles-gersbach:measurement-set-bulk-rna-chir4um-ipsc-cm-rep2"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS2590SMEJ/",
            "accession": "IGVFDS2590SMEJ",
            "aliases": [
                "charles-gersbach:measurement-set-bulk-rna-chir4um-ipsc-cm-rep3"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS9587OBVM/",
            "accession": "IGVFDS9587OBVM",
            "aliases": [
                "charles-gersbach:measurement-set-bulk-rna-control-ipsc-cm-rep1"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS9455NVTH/",
            "accession": "IGVFDS9455NVTH",
            "aliases": [
                "charles-gersbach:measurement-set-bulk-rna-control-ipsc-cm-rep2"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS3697TBRV/",
            "accession": "IGVFDS3697TBRV",
            "aliases": [
                "charles-gersbach:measurement-set-bulk-rna-control-ipsc-cm-rep3"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        }
    ],
    "input_for": [],
    "lab": {
        "@id": "/labs/charles-gersbach/",
        "title": "Charles Gersbach, Duke"
    },
    "protocols": [
        "https://www.protocols.io/view/rna-seq-for-human-ipsc-cm-following-gsk3-inhibitio-kqdg32rb1v25"
    ],
    "release_timestamp": "2024-12-10T00:24:33.911927+00:00",
    "sample_summary": "Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 28 day(s) post change, antagonized with 4 μM GSK3 inhibition for 7 days",
    "samples": [
        {
            "@id": "/in-vitro-systems/IGVFSM9734OHZN/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM9734OHZN",
            "aliases": [
                "charles-gersbach:in-vitro-system-bulk-rna-chir4um-ipsc-cm-rep1"
            ],
            "classifications": [
                "differentiated cell specimen"
            ],
            "institutional_certificates": [
                {
                    "@id": "/institutional-certificates/a62cea9b-2ae0-44e8-a6d6-81f419c56c71/",
                    "certificate_identifier": "IP117-03",
                    "controlled_access": false,
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:WTC11"
                    ],
                    "status": "released",
                    "summary": "GM25256 (WTC-11)",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days treated with 4 μM GSK3 inhibition for 7 days",
            "targeted_sample_term": {
                "@id": "/sample-terms/CL_0000746/",
                "status": "released",
                "term_name": "cardiac muscle cell"
            },
            "taxa": "Homo sapiens",
            "treatments": [
                {
                    "@id": "/treatments/98ba0c5c-8005-41bc-bcbb-6c6eff41af4e/",
                    "purpose": "antagonist",
                    "status": "released",
                    "summary": "Treatment of 4 μM GSK3 inhibition for 7 days",
                    "treatment_type": "chemical"
                }
            ]
        },
        {
            "@id": "/in-vitro-systems/IGVFSM7542AMUP/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM7542AMUP",
            "aliases": [
                "charles-gersbach:in-vitro-system-bulk-rna-control-ipsc-cm-rep2"
            ],
            "classifications": [
                "differentiated cell specimen"
            ],
            "institutional_certificates": [
                {
                    "@id": "/institutional-certificates/a62cea9b-2ae0-44e8-a6d6-81f419c56c71/",
                    "certificate_identifier": "IP117-03",
                    "controlled_access": false,
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:WTC11"
                    ],
                    "status": "released",
                    "summary": "GM25256 (WTC-11)",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days",
            "targeted_sample_term": {
                "@id": "/sample-terms/CL_0000746/",
                "status": "released",
                "term_name": "cardiac muscle cell"
            },
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM6721GJUT/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM6721GJUT",
            "aliases": [
                "charles-gersbach:in-vitro-system-bulk-rna-control-ipsc-cm-rep3"
            ],
            "classifications": [
                "differentiated cell specimen"
            ],
            "institutional_certificates": [
                {
                    "@id": "/institutional-certificates/a62cea9b-2ae0-44e8-a6d6-81f419c56c71/",
                    "certificate_identifier": "IP117-03",
                    "controlled_access": false,
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:WTC11"
                    ],
                    "status": "released",
                    "summary": "GM25256 (WTC-11)",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days",
            "targeted_sample_term": {
                "@id": "/sample-terms/CL_0000746/",
                "status": "released",
                "term_name": "cardiac muscle cell"
            },
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM7851SPEI/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM7851SPEI",
            "aliases": [
                "charles-gersbach:in-vitro-system-bulk-rna-control-ipsc-cm-rep1"
            ],
            "classifications": [
                "differentiated cell specimen"
            ],
            "institutional_certificates": [
                {
                    "@id": "/institutional-certificates/a62cea9b-2ae0-44e8-a6d6-81f419c56c71/",
                    "certificate_identifier": "IP117-03",
                    "controlled_access": false,
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:WTC11"
                    ],
                    "status": "released",
                    "summary": "GM25256 (WTC-11)",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days",
            "targeted_sample_term": {
                "@id": "/sample-terms/CL_0000746/",
                "status": "released",
                "term_name": "cardiac muscle cell"
            },
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM9140ULKM/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM9140ULKM",
            "aliases": [
                "charles-gersbach:in-vitro-system-bulk-rna-chir4um-ipsc-cm-rep2"
            ],
            "classifications": [
                "differentiated cell specimen"
            ],
            "institutional_certificates": [
                {
                    "@id": "/institutional-certificates/a62cea9b-2ae0-44e8-a6d6-81f419c56c71/",
                    "certificate_identifier": "IP117-03",
                    "controlled_access": false,
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:WTC11"
                    ],
                    "status": "released",
                    "summary": "GM25256 (WTC-11)",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days treated with 4 μM GSK3 inhibition for 7 days",
            "targeted_sample_term": {
                "@id": "/sample-terms/CL_0000746/",
                "status": "released",
                "term_name": "cardiac muscle cell"
            },
            "taxa": "Homo sapiens",
            "treatments": [
                {
                    "@id": "/treatments/98ba0c5c-8005-41bc-bcbb-6c6eff41af4e/",
                    "purpose": "antagonist",
                    "status": "released",
                    "summary": "Treatment of 4 μM GSK3 inhibition for 7 days",
                    "treatment_type": "chemical"
                }
            ]
        },
        {
            "@id": "/in-vitro-systems/IGVFSM2298AOEQ/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM2298AOEQ",
            "aliases": [
                "charles-gersbach:in-vitro-system-bulk-rna-chir4um-ipsc-cm-rep3"
            ],
            "classifications": [
                "differentiated cell specimen"
            ],
            "institutional_certificates": [
                {
                    "@id": "/institutional-certificates/a62cea9b-2ae0-44e8-a6d6-81f419c56c71/",
                    "certificate_identifier": "IP117-03",
                    "controlled_access": false,
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:WTC11"
                    ],
                    "status": "released",
                    "summary": "GM25256 (WTC-11)",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days treated with 4 μM GSK3 inhibition for 7 days",
            "targeted_sample_term": {
                "@id": "/sample-terms/CL_0000746/",
                "status": "released",
                "term_name": "cardiac muscle cell"
            },
            "taxa": "Homo sapiens",
            "treatments": [
                {
                    "@id": "/treatments/98ba0c5c-8005-41bc-bcbb-6c6eff41af4e/",
                    "purpose": "antagonist",
                    "status": "released",
                    "summary": "Treatment of 4 μM GSK3 inhibition for 7 days",
                    "treatment_type": "chemical"
                }
            ]
        }
    ],
    "schema_version": "9",
    "status": "released",
    "submitted_by": {
        "@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
        "title": "Ruhi Rai"
    },
    "submitted_files_timestamp": "2024-10-24T17:16:51.749977+00:00",
    "summary": "RNA-seq: fold change over control, transcript quantifications, transcriptome alignments",
    "uuid": "d4ff7830-a109-489d-9522-1a20cf97281f",
    "workflows": [
        {
            "@id": "/workflows/IGVFWF6270QWBB/",
            "accession": "IGVFWF6270QWBB",
            "name": "Gersbach GGR RNA-seq Pipeline",
            "status": "released"
        }
    ]
}