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IGVFDS3307LCYV

released
Aliases
ali-mortazavi:trem2_cortexhippocampus_analysis
File Set Type
principal analysis
Summary
Parse SPLiT-seq: sparse gene count matrix
Description
Trem2 mouse strain analysis for cortex and hippocampus tissues
Workflows
Samples
Mus musculus multiplexed sample of adrenal gland, epididymis, gastrocnemius, heart, hypothalamus, kidney, left cerebral cortex, left hippocampal formation, liver, ovary, oviduct, peripheral blood mononuclear cell, pituitary gland, testis
Attribution
Ali Mortazavi, UCI

Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
2.9 GB
validated

File Association Graph

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File Set
File
AnalysisSet

Samples

4 items
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples
MultiplexedSample
multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples
MultiplexedSample
multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples
MultiplexedSample
multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples

Donors

10 items
Aliases
  • ali-mortazavi:239_TREM2_10M
male
Mus musculus
  • ali-mortazavi:245_TREM2_10M
male
Mus musculus
  • ali-mortazavi:240_TREM2_10F
female
Mus musculus
  • ali-mortazavi:250_TREM2_10F
female
Mus musculus
  • ali-mortazavi:242_TREM2_10F
female
Mus musculus
  • ali-mortazavi:241_TREM2_10M
male
Mus musculus
  • ali-mortazavi:248_TREM2_10F
female
Mus musculus
  • ali-mortazavi:243_TREM2_10M
male
Mus musculus
  • ali-mortazavi:244_TREM2_10F
female
Mus musculus
  • ali-mortazavi:247_TREM2_10M
male
Mus musculus

AnalysisSet Input File Sets

4 items
Parse SPLiT-seq: sparse gene count matrix
Parse SPLiT-seq: sparse gene count matrix
Parse SPLiT-seq: sparse gene count matrix
Parse SPLiT-seq: sparse gene count matrix

Documents

1 item
Page
Description
Type
Download
Preview
UCI/Caltech IGVF tissue pipeline report for CortexHippocampus.pdf
quality control report