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IGVFDS3278AFYF

released
File Set Type
principal analysis
Summary
lentiMPRA: reporter experiment, reporter experiment barcode
Description
Experiment HepG2 MPRAsnakeflow v0.3.0
Workflows
Samples
Homo sapiens HepG2 pooled cell specimen, transfected with a reporter library
Protocols
Attribution
Nadav Ahituv, UCSF

Files

3 items
tsv
reporter experiment barcode
GRCh38 reporter experiment barcode
Nadav Ahituv, UCSF
246 MB
validated
tsv
reporter experiment
GRCh38 reporter experiment
Nadav Ahituv, UCSF
20 MB
validated
tsv
reporter experiment
GRCh38 reporter experiment
Nadav Ahituv, UCSF
19 MB
validated

File Association Graph

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File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HepG2
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting candidate cis-regulatory elements genome-wide

MeasurementSet Input File Sets

3 items
Associated Auxiliary Sets
lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide
Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library
lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide
Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library
lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide
Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library

AnalysisSet Input File Sets

1 item
Accession
Summary
Unspecified assay: barcode to element mapping

AuxiliarySet Input File Sets

3 items
Associated Measurement Sets
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide

Documents

2 items
Page
Preview
QC report experiment MPRAsnakeflow v0.3.0
quality control report
MPRAsnakeflow v0.3.0 experiment HepG2 workflow config file
computational protocol