{
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],
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"WARNING": [
{
"category": "missing age",
"detail": "Primary cell [IGVFSM6508DFUL](/primary-cells/IGVFSM6508DFUL/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
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"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM6508DFUL/"
},
{
"category": "missing age",
"detail": "Primary cell [IGVFSM3805WZUU](/primary-cells/IGVFSM3805WZUU/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
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"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM3805WZUU/"
},
{
"category": "missing age",
"detail": "Primary cell [IGVFSM4633QTQY](/primary-cells/IGVFSM4633QTQY/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
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"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM4633QTQY/"
}
]
},
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"title": "High-Throughput Functional Annotation of Gene Regulatory Elements and Variants Critical to Complex Cellular Phenotypes"
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],
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"status": "released",
"taxa": "Homo sapiens"
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{
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"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1522NSLA/",
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
}
],
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"upload_status": "validated"
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{
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"file_format": "bam",
"file_size": 1311182631,
"href": "/alignment-files/IGVFFI0822LWRZ/@@download/IGVFFI0822LWRZ.bam",
"s3_uri": "s3://igvf-files/2024/10/14/fe983108-8c8b-4744-ae57-4853a60ffd39/IGVFFI0822LWRZ.bam",
"submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8-pSM7-IL-2-D2.star2.Aligned.out.sorted.bam",
"upload_status": "validated"
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{
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"accession": "IGVFFI3680NTHN",
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"s3_uri": "s3://igvf-files/2024/10/14/ea219325-147f-47d7-8fc6-2aacde21a0bc/IGVFFI3680NTHN.bam",
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"upload_status": "validated"
}
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"input_file_sets": [
{
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"accession": "IGVFDS4221ZTFC",
"aliases": [
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],
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{
"@id": "/measurement-sets/IGVFDS6590HDLA/",
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{
"@id": "/measurement-sets/IGVFDS4808GJDM/",
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"aliases": [
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],
"file_set_type": "experimental data"
}
],
"input_for": [
"/analysis-sets/IGVFDS4582MPNU/"
],
"lab": {
"@id": "/labs/charles-gersbach/",
"title": "Charles Gersbach, Duke"
},
"protocols": [
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"publications": [
{
"@id": "/publications/6cc80a53-4ca1-4bd4-9942-f0f335b7ec20/",
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"release_timestamp": "2024-10-29T17:38:49.244995+00:00",
"sample_summary": "CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library",
"samples": [
{
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"construct_library_sets": [
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],
"status": "released",
"summary": "CD8-positive, alpha-beta memory T cell",
"term_name": "CD8-positive, alpha-beta memory T cell"
}
],
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"summary": "CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library",
"taxa": "Homo sapiens"
},
{
"@id": "/primary-cells/IGVFSM4633QTQY/",
"@type": [
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"Sample",
"Item"
],
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"aliases": [
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"sample_terms": [
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"Item"
],
"status": "released",
"summary": "CD8-positive, alpha-beta memory T cell",
"term_name": "CD8-positive, alpha-beta memory T cell"
}
],
"status": "released",
"summary": "CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library",
"taxa": "Homo sapiens"
},
{
"@id": "/primary-cells/IGVFSM6508DFUL/",
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"Sample",
"Item"
],
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"aliases": [
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}
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"summary": "RNA-seq: transcriptome alignments",
"uuid": "487d9da3-d8e0-4984-949a-72d727a43ed1",
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"name": "Gersbach GGR RNA-seq Pipeline"
}
]
}