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IGVFDS2950ZMLN

released
Aliases
ali-mortazavi:founder_cortexhippocampus_analysis
File Set Type
principal analysis
Summary
Parse SPLiT-seq: sparse gene count matrix
Description
8 cube founder strain analysis for cortex and hippocampus tissues
Workflows
Samples
Mus musculus multiplexed sample of adrenal gland, gastrocnemius, heart, hypothalamus, left cerebral cortex, left hippocampal formation, pituitary gland, right cerebral cortex, right hippocampal formation
Attribution
Ali Mortazavi, UCI

Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
81 GB
validated

File Association Graph

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File Set
File
AnalysisSet

Samples

40 items
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) heart tissue; Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue; ... and 12 more samples
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples

Donors

72 items
Aliases
  • ali-mortazavi:018_B6J_10F
female
Mus musculus
  • ali-mortazavi:041_129S1J_10M
male
Mus musculus
  • ali-mortazavi:030_AJ_10F
female
Mus musculus
  • ali-mortazavi:052_NZOJ_10F
female
Mus musculus
  • ali-mortazavi:057_WSBJ_10M
male
Mus musculus
  • ali-mortazavi:080_PWKJ_10F
female
Mus musculus
  • ali-mortazavi:069_NODJ_10M
male
Mus musculus
  • ali-mortazavi:058_WSBJ_10F
female
Mus musculus
  • ali-mortazavi:035_AJ_10M
male
Mus musculus
  • ali-mortazavi:088_CASTJ_10F
female
Mus musculus

AnalysisSet Input File Sets

40 items
Parse SPLiT-seq: sparse gene count matrix
Parse SPLiT-seq: sparse gene count matrix
Parse SPLiT-seq: sparse gene count matrix
Parse SPLiT-seq: sparse gene count matrix
Parse SPLiT-seq: sparse gene count matrix
Parse SPLiT-seq: sparse gene count matrix
Parse SPLiT-seq: sparse gene count matrix
Parse SPLiT-seq: sparse gene count matrix
Parse SPLiT-seq: sparse gene count matrix
Parse SPLiT-seq: sparse gene count matrix

Documents

3 items
Page
Preview
UCI/Caltech IGVF tissue pipeline report for CortexHippocampus.pdf
quality control report
UCI/Caltech IGVF tissue pipeline report for CortexHippocampus.pdf
quality control report
UCI/Caltech IGVF tissue pipeline report for CortexHippocampus.pdf
quality control report