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IGVFDS2562CZKX

released
Aliases
charles-gersbach:analysis-set-crispra-control-mouse-hl1-targeted-hicar-rep2-cool
File Set Type
intermediate analysis
Summary
HiCAR: contact matrix
Workflows
Samples
HL-1 cell line, transfected with a guide library
Protocols

Files

2 items
cool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
12 MB
validated
mcool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
52 MB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • charles-gersbach:mouse-donor-HL-1
female
Mus musculus

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
non-targeting guide (sgRNA) library

MeasurementSet Input File Sets

1 item
Measurement Sets
Measured Samples
CRISPR HiCAR integrating a non-targeting guide (sgRNA) library
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library

File Sets Using This Analysis Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
HiCAR: bin paired count, differential chromatin contact quantifications
  • charles-gersbach:analysis-set-crispra-HL1-region3-DEanalysis
Charles Gersbach, Duke

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke