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IGVFDS2296EFNK

released
Aliases
charles-gersbach:analysis-set-crispra-region3-1umET1-ipsc-cm-targeted-hicar-rep2-cool
File Set Type
intermediate analysis
Summary
HiCAR: contact matrix
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
Protocols

Files

2 items
cool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
7.5 MB
validated
mcool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
33 MB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • charles-gersbach:human-donor-WTC11
male
Homo sapiens

MeasurementSet Input File Sets

1 item
Measurement Sets
Measured Samples
Associated Construct Library Sets
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library

File Sets Using This Analysis Set as an Input

2 items
AnalysisSet
HiCAR: bin paired count, differential chromatin contact quantifications
  • charles-gersbach:analysis-set-crispra-stim-NT-region3-DEanalysis
Charles Gersbach, Duke
AnalysisSet
HiCAR: bin paired count, differential chromatin contact quantifications
  • charles-gersbach:analysis-set-crispra-stim-ctrl-region3-DEanalysis
Charles Gersbach, Duke

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke