{
"@context": "/terms/",
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],
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],
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],
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{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
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"name": "audit_ntr_term_id",
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},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI5029LHBH](/matrix-files/IGVFFI5029LHBH/) has in progress subobject reference file [IGVFFI8311QXYM](/reference-files/IGVFFI8311QXYM/).",
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"name": "audit_item_status",
"path": "/matrix-files/IGVFFI5029LHBH/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI5029LHBH](/matrix-files/IGVFFI5029LHBH/) has in progress subobject reference file [IGVFFI3944QOJF](/reference-files/IGVFFI3944QOJF/).",
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"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI5029LHBH/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI2641LMFU](/matrix-files/IGVFFI2641LMFU/) has in progress subobject reference file [IGVFFI8311QXYM](/reference-files/IGVFFI8311QXYM/).",
"level": 30,
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"name": "audit_item_status",
"path": "/matrix-files/IGVFFI2641LMFU/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI2641LMFU](/matrix-files/IGVFFI2641LMFU/) has in progress subobject reference file [IGVFFI3944QOJF](/reference-files/IGVFFI3944QOJF/).",
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"name": "audit_item_status",
"path": "/matrix-files/IGVFFI2641LMFU/"
},
{
"category": "missing demultiplexed sample",
"detail": "Analysis set [IGVFDS2018URDY](/analysis-sets/IGVFDS2018URDY/) has `input_file_sets` with multiplexed samples: [IGVFSM0539NUPM](/multiplexed-samples/IGVFSM0539NUPM/), [IGVFSM4547BFMA](/multiplexed-samples/IGVFSM4547BFMA/) but no `demultiplexed_sample`. Analysis sets with multiplexed samples are expected to specify a demultiplexed sample.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_analysis_set_multiplexed_samples",
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}
]
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},
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},
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{
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{
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},
{
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],
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},
{
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"ansuman-satpathy:multiseq_igvf10_10x2"
],
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}
],
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"lab": {
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"title": "Ansuman Satpathy, Stanford"
},
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],
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{
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"Sample",
"Item"
],
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],
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],
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}
],
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"OntologyTerm",
"Item"
],
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],
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},
{
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"SampleTerm",
"OntologyTerm",
"Item"
],
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],
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},
{
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"SampleTerm",
"OntologyTerm",
"Item"
],
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],
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"term_name": "Jurkat"
},
{
"@id": "/sample-terms/NTR_0000753/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:TeloHAEC"
],
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"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples",
"taxa": "Homo sapiens",
"treatments": [
{
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},
{
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"purpose": "stimulation",
"status": "released",
"summary": "Treatment of 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours",
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}
]
},
{
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"Sample",
"Item"
],
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"aliases": [
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],
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"multiplexed sample"
],
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{
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}
],
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{
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"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
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],
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},
{
"@id": "/sample-terms/EFO_0002067/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
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],
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},
{
"@id": "/sample-terms/EFO_0002796/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:Jurkat"
],
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"summary": "Jurkat",
"term_name": "Jurkat"
},
{
"@id": "/sample-terms/NTR_0000753/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:TeloHAEC"
],
"status": "released",
"summary": "TeloHAEC",
"term_name": "TeloHAEC"
}
],
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"summary": "multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/42b3c61d-38de-4bd2-bb39-33c125a417cb/",
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"summary": "Treatment of 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours",
"treatment_type": "chemical"
},
{
"@id": "/treatments/df02c0d4-f796-4f77-bfbc-388cdbfcc615/",
"purpose": "stimulation",
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"summary": "Treatment of 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours",
"treatment_type": "protein"
}
]
}
],
"schema_version": "9",
"status": "released",
"submitted_by": {
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"title": "Christopher Mcginnis"
},
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"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix",
"uuid": "4db965e6-265f-4a06-8c97-206cfaf32de9",
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{
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"accession": "IGVFWF1453HVEC",
"name": "Satpathy Cell Ranger",
"status": "released",
"uniform_pipeline": false
}
]
}