{
"@context": "/terms/",
"@id": "/analysis-sets/IGVFDS2016MIJN/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
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"aliases": [
"ali-mortazavi:igvf_005_Subpool_14_total+core"
],
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM6827EKQN](/multiplexed-samples/IGVFSM6827EKQN/) has in progress subobject tabular file [IGVFFI2030VAID](/tabular-files/IGVFFI2030VAID/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM6827EKQN/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM6827EKQN](/multiplexed-samples/IGVFSM6827EKQN/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM6827EKQN/"
},
{
"category": "missing demultiplexed sample",
"detail": "Analysis set [IGVFDS2016MIJN](/analysis-sets/IGVFDS2016MIJN/) has `input_file_sets` with multiplexed samples: [IGVFSM6827EKQN](/multiplexed-samples/IGVFSM6827EKQN/) but no `demultiplexed_sample`. Analysis sets with multiplexed samples are expected to specify a demultiplexed sample.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_analysis_set_multiplexed_samples",
"path": "/analysis-sets/IGVFDS2016MIJN/"
},
{
"category": "missing publication",
"detail": "Analysis set [IGVFDS2016MIJN](/analysis-sets/IGVFDS2016MIJN/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/analysis-sets/IGVFDS2016MIJN/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2025-04-05T02:03:36.891780+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"description": "8 cube mouse founder strains plate igvf_005 Subpool_14 with Liver as the primary tissue and Diencephalon/Pituitary as the genetically multiplexed tissue",
"documents": [
"/documents/9806bcd7-e70c-454d-905b-3c8083b894c5/"
],
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{
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"ali-mortazavi:050_NZOJ_10F"
],
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},
{
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},
{
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},
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{
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},
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},
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],
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},
{
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{
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},
{
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{
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},
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},
{
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{
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},
{
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},
{
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],
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},
{
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{
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{
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{
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{
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{
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{
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},
{
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{
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{
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},
{
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},
{
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},
{
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},
{
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},
{
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],
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},
{
"@id": "/rodent-donors/IGVFDO4469VYEZ/",
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],
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},
{
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],
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{
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{
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],
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{
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],
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"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
}
],
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"/sequence-files/IGVFFI6272EFPO/",
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"/sequence-files/IGVFFI7445RXBA/",
"/sequence-files/IGVFFI8278MMLM/",
"/sequence-files/IGVFFI9278LERT/",
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"status": "released",
"submitted_file_name": "igvf_005/igvf_005_Subpool_14_total+core.tar.gz",
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}
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],
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}
],
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"/analysis-sets/IGVFDS0536IBST/"
],
"lab": {
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"title": "Ali Mortazavi, UCI"
},
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"https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-kxygx396zg8j/v2",
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"Sample",
"Item"
],
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],
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{
"@id": "/sample-terms/UBERON_0000007/",
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"OntologyTerm",
"Item"
],
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},
{
"@id": "/sample-terms/UBERON_0001898/",
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"OntologyTerm",
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{
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "liver",
"term_name": "liver"
}
],
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"summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
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"status": "released",
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"title": "Diane Trout"
},
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"summary": "Parse SPLiT-seq: sparse gene count matrix",
"uuid": "20aec008-28c9-4663-b53c-ba0dbcf8e568",
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"status": "released"
}
]
}