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IGVFDS1583PWNS

released
No limitations
Aliases
ansuman-satpathy:igvf2_analysis_set
File Set Type
intermediate analysis
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Description
Quality-control workflow performed by Satpathy Lab - teloHAEC +/- TNFa for 0hr, 4hr, or 24hr
Workflows
Samples
Homo sapiens multiplexed sample of TeloHAEC, perturbed with 10 ng/mL tumor necrosis factor alpha for 1 day, 10 ng/mL tumor necrosis factor alpha for 4 hours
Protocols
Attribution
Ansuman Satpathy, Stanford

Files

5 items
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
605 KB
validated
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
184 MB
validated
tbi
index
index of IGVFFI6774RPHJ
Ansuman Satpathy, Stanford
2.0 MB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.4 MB
validation exempted
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.9 GB
validation exempted

File Association Graph

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File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_teloHAEC
female
Homo sapiens

MeasurementSet Input File Sets

2 items
Associated Auxiliary Sets
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples

AuxiliarySet Input File Sets

1 item
Auxiliary Sets
Measured Samples
Associated Measurement Sets
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples