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IGVFDS1496CETT

released
Aliases
ali-mortazavi:igvf_003_Subpool_5_total+core
File Set Type
intermediate analysis
Summary
Parse SPLiT-seq: sparse gene count matrix
Description
8 cube mouse founder strains plate igvf_003 Subpool_5 with Cortex/Hippocampus as the primary tissue and Heart as the genetically multiplexed tissue
Workflows
Samples
Mus musculus multiplexed sample of heart, left cerebral cortex, left hippocampal formation, right cerebral cortex, right hippocampal formation
Protocols
Attribution
Ali Mortazavi, UCI

Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tar
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
1.3 GB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples

Donors

65 items
Aliases
  • ali-mortazavi:018_B6J_10F
female
Mus musculus
  • ali-mortazavi:041_129S1J_10M
male
Mus musculus
  • ali-mortazavi:030_AJ_10F
female
Mus musculus
  • ali-mortazavi:052_NZOJ_10F
female
Mus musculus
  • ali-mortazavi:057_WSBJ_10M
male
Mus musculus
  • ali-mortazavi:080_PWKJ_10F
female
Mus musculus
  • ali-mortazavi:069_NODJ_10M
male
Mus musculus
  • ali-mortazavi:058_WSBJ_10F
female
Mus musculus
  • ali-mortazavi:035_AJ_10M
male
Mus musculus
  • ali-mortazavi:088_CASTJ_10F
female
Mus musculus

MeasurementSet Input File Sets

1 item
Measurement Sets
Measured Samples
Parse SPLiT-seq
multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples

File Sets Using This Analysis Set as an Input

2 items
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:founder_heart_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:founder_cortexhippocampus_analysis
Ali Mortazavi, UCI

Documents

1 item
Page
Description
Type
Download
Preview
UCI/Caltech IGVF dataset pipeline report for igvf_003_Subpool_5
plate map