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IGVFDS1376WOXJ

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Aliases
jesse-engreitz:PPIF_promoter_lentiMPRA_MPRAsnakeflow_analysis
File Set Type
principal analysis
Summary
lentiMPRA: reporter experiment
Workflows
Samples
Homo sapiens THP-1 cell line, transfected with a reporter library
Protocols
Attribution
Jesse Engreitz, Stanford

Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
reporter experiment
reporter experiment
Jesse Engreitz, Stanford
51 KB
validated

File Association Graph

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File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

3 items
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library
InVitroSystem
Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library
InVitroSystem
Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_THP1
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting sequence variants in a genomic locus

MeasurementSet Input File Sets

3 items
Associated Auxiliary Sets
lentiMPRA integrating a reporter library targeting sequence variants in a genomic locus
Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library
lentiMPRA integrating a reporter library targeting sequence variants in a genomic locus
Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library
lentiMPRA integrating a reporter library targeting sequence variants in a genomic locus
Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library

AuxiliarySet Input File Sets

3 items
Associated Measurement Sets
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting sequence variants in a genomic locus
Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting sequence variants in a genomic locus
Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting sequence variants in a genomic locus
Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library

File Sets Using This Analysis Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
lentiMPRA: reporter variants
  • jesse-engreitz:PPIF_promoter_lentiMPRA_mpralm_analysis
Jesse Engreitz, Stanford