{
"@context": "/terms/",
"@id": "/analysis-sets/IGVFDS1162EVFG/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1162EVFG",
"aliases": [
"ali-mortazavi:igvf_007_Subpool_2_total+core"
],
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing demultiplexed sample",
"detail": "Analysis set [IGVFDS1162EVFG](/analysis-sets/IGVFDS1162EVFG/) has `input_file_sets` with multiplexed samples: [IGVFSM7956VUAG](/multiplexed-samples/IGVFSM7956VUAG/) but no `demultiplexed_sample`. Analysis sets with multiplexed samples are expected to specify a demultiplexed sample.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_analysis_set_multiplexed_samples",
"path": "/analysis-sets/IGVFDS1162EVFG/"
},
{
"category": "missing publication",
"detail": "Analysis set [IGVFDS1162EVFG](/analysis-sets/IGVFDS1162EVFG/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/analysis-sets/IGVFDS1162EVFG/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM7956VUAG](/multiplexed-samples/IGVFSM7956VUAG/) has in progress subobject tabular file [IGVFFI4658LINI](/tabular-files/IGVFFI4658LINI/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM7956VUAG/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM7956VUAG](/multiplexed-samples/IGVFSM7956VUAG/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM7956VUAG/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2025-04-05T02:03:53.140092+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"description": "8 cube mouse founder strains plate igvf_007 Subpool_2 with Diencephalon/Pituitary as the primary tissue and Gonads as the genetically multiplexed tissue",
"documents": [
"/documents/a8378101-1111-4986-970f-822c0aece32c/"
],
"donors": [
{
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"ali-mortazavi:085_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
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"ali-mortazavi:043_129S1J_10M"
],
"sex": "male",
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},
{
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"ali-mortazavi:093_CASTJ_10M"
],
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},
{
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"ali-mortazavi:092_CASTJ_10F"
],
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},
{
"@id": "/rodent-donors/IGVFDO5737FRWD/",
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"ali-mortazavi:081_PWKJ_10M"
],
"sex": "male",
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},
{
"@id": "/rodent-donors/IGVFDO1744FDIX/",
"accession": "IGVFDO1744FDIX",
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"ali-mortazavi:036_129S1J_10F"
],
"sex": "female",
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},
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
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],
"sex": "female",
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},
{
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"accession": "IGVFDO7062NBTQ",
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"ali-mortazavi:079_PWKJ_10M"
],
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},
{
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],
"sex": "female",
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
"@id": "/rodent-donors/IGVFDO3655FKMR/",
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],
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},
{
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],
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},
{
"@id": "/rodent-donors/IGVFDO8904OIIT/",
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],
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},
{
"@id": "/rodent-donors/IGVFDO7610XXRR/",
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],
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},
{
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],
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},
{
"@id": "/rodent-donors/IGVFDO3640WUBU/",
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],
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},
{
"@id": "/rodent-donors/IGVFDO0696DMIA/",
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],
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},
{
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],
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},
{
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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},
{
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],
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},
{
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},
{
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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},
{
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],
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{
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{
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},
{
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
"@id": "/rodent-donors/IGVFDO0681EHNP/",
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],
"sex": "female",
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},
{
"@id": "/rodent-donors/IGVFDO2831PZHE/",
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],
"sex": "male",
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"strain_background": "PWK/PhJ (PWK)",
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},
{
"@id": "/rodent-donors/IGVFDO6141KSSQ/",
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],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6112GRYR/",
"accession": "IGVFDO6112GRYR",
"aliases": [
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],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5502NJPS/",
"accession": "IGVFDO5502NJPS",
"aliases": [
"ali-mortazavi:038_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9340WGNV/",
"accession": "IGVFDO9340WGNV",
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],
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],
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}