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AnalysisSet
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IGVFDS1127IRGQ
IGVFDS1127IRGQ
released
Json view
Aliases
charles-gersbach:analysis-set-crispra-region3-0umET1-ipsc-cm-targeted-hicar-rep3-cool
File Set Type
intermediate analysis
Summary
HiCAR: contact matrix
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
Protocols
https://www.protocols.io/view/hicar-for-human-ipsc-cm-following-enhancer-perturb-3byl49mdrgo5
Files
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI2932NURH
mcool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
38 MB
validated
IGVFFI6024SAQN
cool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
8.5 MB
validated
File Association Graph
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File Set
File
AnalysisSet
MeasurementSet
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM5123PXCO
InVitroSystem
GM25256 (WTC-11)
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO3212TBUN
charles-gersbach:human-donor-WTC11
male
Homo sapiens
MeasurementSet Input File Sets
Show aliases columns
1 item
Measurement Sets
Measured Samples
Associated Construct Library Sets
IGVFDS8359JYZP
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus
IGVFSM5123PXCO
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library
File Sets Using This Analysis Set as an Input
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS4356CHAN
AnalysisSet
HiCAR: bin paired count, differential chromatin contact quantifications
charles-gersbach:analysis-set-crispra-ctrl-NT-region3-DEanalysis
Charles Gersbach, Duke
IGVFDS9720UJIP
AnalysisSet
HiCAR: bin paired count, differential chromatin contact quantifications
charles-gersbach:analysis-set-crispra-stim-ctrl-region3-DEanalysis
Charles Gersbach, Duke
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke