IGVFDS1003XTAF

preview
1{
2    "@context": "/terms/",
3    "@id": "/analysis-sets/IGVFDS1003XTAF/",
4    "@type": [
5        "AnalysisSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS1003XTAF",
10    "aliases": [
11        "jesse-engreitz:PPIF_promoter_lentiMPRA_CRS-BC_analysis"
12    ],
13    "assay_titles": [
14        "lentiMPRA"
15    ],
16    "audit": {
17        "NOT_COMPLIANT": [
18            {
19                "category": "missing file format specifications",
20                "detail": "Tabular file [IGVFFI1529QZRS](/tabular-files/IGVFFI1529QZRS/) has no `file_format_specifications`. Tabular files, with the exception of vcf files, are expected to link to a file format specifications document describing the headers of the file.",
21                "level": 50,
22                "level_name": "NOT_COMPLIANT",
23                "name": "audit_file_no_file_format_specifications",
24                "path": "/tabular-files/IGVFFI1529QZRS/"
25            },
26            {
27                "category": "missing analysis step version",
28                "detail": "Analysis set [IGVFDS1003XTAF](/analysis-sets/IGVFDS1003XTAF/) links to file(s) [IGVFFI1529QZRS](/tabular-files/IGVFFI1529QZRS/) that are missing `analysis_step_version`. Analysis set files are expected to specify analysis step version.",
29                "level": 50,
30                "level_name": "NOT_COMPLIANT",
31                "name": "audit_analysis_set_files_missing_analysis_step_version",
32                "path": "/analysis-sets/IGVFDS1003XTAF/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG011972/",
38        "component": "functional characterization",
39        "contact_pi": {
40            "@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
41            "title": "Jesse Engreitz"
42        },
43        "title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
44    },
45    "control_for": [],
46    "creation_timestamp": "2024-11-23T01:18:38.679410+00:00",
47    "file_set_type": "intermediate analysis",
48    "files": [
49        {
50            "@id": "/tabular-files/IGVFFI1529QZRS/",
51            "accession": "IGVFFI1529QZRS",
52            "aliases": [
53                "jesse-engreitz:PPIF_promoter_lentiMPRA_CRS-BC_Mapping_Filtered"
54            ],
55            "content_type": "barcode to element mapping",
56            "controlled_access": false,
57            "creation_timestamp": "2024-11-23T01:39:01.558499+00:00",
58            "file_format": "tsv",
59            "file_size": 144915,
60            "href": "/tabular-files/IGVFFI1529QZRS/@@download/IGVFFI1529QZRS.tsv.gz",
61            "s3_uri": "s3://igvf-files/2024/11/23/3d36f2fc-6e21-411e-90e4-f81140290e52/IGVFFI1529QZRS.tsv.gz",
62            "status": "preview",
63            "submitted_file_name": "PPIF_promoter_lentiMPRA_CRS-BC_Mapping_Filtered.tsv.gz",
64            "upload_status": "validated"
65        }
66    ],
67    "functional_assay_mechanisms": [],
68    "input_file_sets": [
69        {
70            "@id": "/construct-library-sets/IGVFDS3011TBLW/",
71            "accession": "IGVFDS3011TBLW",
72            "aliases": [
73                "jesse-engreitz:PPIF_promoter_lentiMPRA-ReporterLibrarySequencing"
74            ],
75            "file_set_type": "reporter library",
76            "status": "preview"
77        }
78    ],
79    "input_for": [],
80    "lab": {
81        "@id": "/labs/jesse-engreitz/",
82        "title": "Jesse Engreitz, Stanford"
83    },
84    "protocols": [],
85    "samples": [],
86    "schema_version": "9",
87    "status": "preview",
88    "submitted_by": {
89        "@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
90        "title": "Michael Montgomery"
91    },
92    "submitted_files_timestamp": "2024-11-23T01:39:01.558499+00:00",
93    "summary": "lentiMPRA reporter library: barcode to element mapping",
94    "uuid": "25ebe5df-feac-4cf8-81c0-fb98026e319f",
95    "workflows": []
96}