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IGVFDS0872LUHP

released
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Aliases
charles-gersbach:analysis-set-crispra-HL1-region3-DEanalysis
File Set Type
principal analysis
Summary
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus and a non-targeting guide (sgRNA) library
Workflows
Samples
Mus musculus HL-1 cell line, transfected with a guide library
Attribution
Charles Gersbach, Duke

Files

2 items
csv
differential chromatin contact quantifications
GRCm39 differential chromatin contact quantifications
Charles Gersbach, Duke
6.8 KB
validated
tsv
bin paired count
GRCm39 bin paired count
Charles Gersbach, Duke
2.1 KB
validated

File Association Graph

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File Set
File
AnalysisSet

Samples

6 items
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • charles-gersbach:mouse-donor-HL-1
female
Mus musculus

Associated Construct Library Sets

2 items
Summary
Library Design Files
non-targeting guide (sgRNA) library
guide (sgRNA) library targeting accessible genome regions in a genomic locus

AnalysisSet Input File Sets

6 items
CRISPR HiCAR integrating a non-targeting guide (sgRNA) library
CRISPR HiCAR integrating a non-targeting guide (sgRNA) library
CRISPR HiCAR integrating a non-targeting guide (sgRNA) library
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus