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IGVFDS0793KZKS

released
Aliases
ansuman-satpathy:igvf12_analysis_set
ansuman-satpathy:igvf12_analysis_set_10x1
File Set Type
intermediate analysis
Summary
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Description
Quality-control workflow performed by Satpathy Lab - Primary B cell differentiation, human bone marrow
Workflows
Samples
multiplexed sample of B cell, bone marrow
Protocols

Files

5 items
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
183 KB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.2 MB
validation exempted
tsv
fragments
fragments
Ansuman Satpathy, Stanford
4.3 GB
validation exempted
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
158 MB
validated
tbi
index
index of IGVFFI7212WXZR
Ansuman Satpathy, Stanford
1.6 MB
validated

File Association Graph

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File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Donors

3 items
Aliases
  • ansuman-satpathy:singh_bcell_donor_2
female
Homo sapiens
  • ansuman-satpathy:bridge_bone_marrow_donor_2038
male
Homo sapiens
  • ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens

MeasurementSet Input File Sets

2 items
Associated Auxiliary Sets
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

AuxiliarySet Input File Sets

1 item
Auxiliary Sets
Measured Samples
Associated Measurement Sets
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford