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IGVFDS0718WXPI

released
Aliases
buenrostro-bernstein:surya-human-invitro-analysis-set
File Set Type
intermediate analysis
Summary
SHARE-seq: fragments, sparse gene count matrix
Workflows
Samples
Homo sapiens colon epithelial cell organoid induced to colon, at 7 day(s) post change
Protocols
Attribution
Jason Buenrostro, Broad

Files

2 items
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
64 MB
validated
tsv
fragments
fragments
Jason Buenrostro, Broad
1.2 GB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens colon epithelial cell organoid induced to colon for 7 days

Donors

6 items
Aliases
  • buenrostro-bernstein:surya-H443 1_to_16
unspecified
Homo sapiens
  • buenrostro-bernstein:surya-H456 17_to_32
unspecified
Homo sapiens
  • buenrostro-bernstein:surya-H514 73_to_88
unspecified
Homo sapiens
  • buenrostro-bernstein:surya-H511 49_to_56
unspecified
Homo sapiens
  • buenrostro-bernstein:surya-H371 57_to_72
unspecified
Homo sapiens
  • buenrostro-bernstein:surya-H492A 89_to_96
unspecified
Homo sapiens

MeasurementSet Input File Sets

2 items
single-cell ATAC-seq (SHARE-seq)
Homo sapiens colon epithelial cell organoid induced to colon for 7 days
single-cell RNA sequencing assay (SHARE-seq)
Homo sapiens colon epithelial cell organoid induced to colon for 7 days