Home

IGVFDS0635KHHW

released
Aliases
buenrostro-bernstein:AnalysisSet_BioSam-4561_SS-PKR-130
File Set Type
intermediate analysis
Summary
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
Workflows
Samples
Mus musculus brain tissue
Protocols
Attribution
Jason Buenrostro, Broad

Files

6 items
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
3.0 GB
validated
tbi
index
index of IGVFFI6441PWQZ
Jason Buenrostro, Broad
557 KB
validated
bai
index
index of IGVFFI0876EPIM
Jason Buenrostro, Broad
2.2 MB
validated
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
423 MB
validated
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.6 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
467 MB
validated

File Association Graph

Loading…
File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)

Donors

1 item
Accession
Aliases
Sex
Taxa
  • bradley-bernstein:Donor 1503
  • buenrostro-bernstein:Donor 1503
female
Mus musculus

MeasurementSet Input File Sets

6 items
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)