{
"@context": "/terms/",
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],
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],
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],
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"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM7909ETQJ](/multiplexed-samples/IGVFSM7909ETQJ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM7909ETQJ/"
},
{
"category": "missing demultiplexed sample",
"detail": "Analysis set [IGVFDS0398ALPE](/analysis-sets/IGVFDS0398ALPE/) has `input_file_sets` with multiplexed samples: [IGVFSM7909ETQJ](/multiplexed-samples/IGVFSM7909ETQJ/) but no `demultiplexed_sample`. Analysis sets with multiplexed samples are expected to specify a demultiplexed sample.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_analysis_set_multiplexed_samples",
"path": "/analysis-sets/IGVFDS0398ALPE/"
},
{
"category": "missing publication",
"detail": "Analysis set [IGVFDS0398ALPE](/analysis-sets/IGVFDS0398ALPE/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/analysis-sets/IGVFDS0398ALPE/"
}
]
},
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"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
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"data_use_limitation_summaries": [
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],
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{
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],
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"status": "released",
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}
],
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],
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},
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{
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],
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},
{
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],
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"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS3953KNVA/",
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],
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}
],
"input_for": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
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],
"release_timestamp": "2025-03-07T06:05:20.811402+00:00",
"sample_summary": "Homo sapiens multiplexed sample of RUES2",
"samples": [
{
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"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM7909ETQJ",
"aliases": [
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],
"cellular_sub_pool": "1",
"classifications": [
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],
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"institutional_certificates": [
{
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}
],
"modifications": [],
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{
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"@type": [
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "RUES2",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "multiplexed sample: Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days; Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
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"submitted_by": {
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},
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"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)",
"uuid": "38ff6127-5517-4d0e-8959-4f704e5eea60",
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"uniform_pipeline": false
}
]
}