{
"@context": "/terms/",
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],
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],
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],
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{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM2522EBPE](/multiplexed-samples/IGVFSM2522EBPE/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM2522EBPE/"
},
{
"category": "missing demultiplexed sample",
"detail": "Analysis set [IGVFDS0287NOBE](/analysis-sets/IGVFDS0287NOBE/) has `input_file_sets` with multiplexed samples: [IGVFSM2522EBPE](/multiplexed-samples/IGVFSM2522EBPE/) but no `demultiplexed_samples`. Analysis sets with multiplexed samples are expected to specify a demultiplexed sample.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_analysis_set_multiplexed_samples",
"path": "/analysis-sets/IGVFDS0287NOBE/"
},
{
"category": "missing publication",
"detail": "Analysis set [IGVFDS0287NOBE](/analysis-sets/IGVFDS0287NOBE/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/analysis-sets/IGVFDS0287NOBE/"
}
]
},
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"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
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"data_use_limitation_summaries": [
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],
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{
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"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
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},
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"upload_status": "validated"
},
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"creation_timestamp": "2025-01-28T06:00:47.191584+00:00",
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"upload_status": "validation exempted"
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{
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],
"assembly": "GRCh38",
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"creation_timestamp": "2025-01-28T06:01:21.388474+00:00",
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"status": "released",
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"upload_status": "validation exempted"
},
{
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"aliases": [
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],
"content_type": "raw feature barcode matrix",
"creation_timestamp": "2025-01-28T15:37:27.385615+00:00",
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"/sequence-files/IGVFFI2705QXPC/",
"/sequence-files/IGVFFI2582COPQ/",
"/sequence-files/IGVFFI4100LRTU/",
"/sequence-files/IGVFFI6261TVHR/",
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}
],
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"input_file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS8391OPLO/",
"accession": "IGVFDS8391OPLO",
"aliases": [
"ansuman-satpathy:multiseq_igvf6_10x4"
],
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{
"@id": "/measurement-sets/IGVFDS6424PGVE/",
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],
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{
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],
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"status": "released"
}
],
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"lab": {
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"title": "Ansuman Satpathy, Stanford"
},
"protocols": [
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],
"release_timestamp": "2025-03-22T00:42:48.467534+00:00",
"sample_summary": "Homo sapiens multiplexed sample of H1-hESC",
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{
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"@type": [
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"Sample",
"Item"
],
"accession": "IGVFSM2522EBPE",
"aliases": [
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],
"classifications": [
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],
"disease_terms": [],
"institutional_certificates": [
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"status": "released"
}
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{
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"@type": [
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"OntologyTerm",
"Item"
],
"aliases": [
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],
"status": "released",
"summary": "H1-hESC",
"term_name": "H1-hESC"
}
],
"status": "released",
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"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "10",
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"submitted_by": {
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"title": "Khine Lin"
},
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"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)",
"uuid": "4ebb8fbd-dcc8-4e31-b4ef-9c5bbef32484",
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{
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"name": "Satpathy Cell Ranger",
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"uniform_pipeline": false
}
]
}