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IGVFDS0108MUVF

released
Aliases
ali-mortazavi:igvf_012_Subpool_2_total+core
File Set Type
intermediate analysis
Summary
Parse SPLiT-seq: sparse gene count matrix
Description
8 cube mouse founder strains plate igvf_012 Subpool_2 with mixed tissues
Workflows
Samples
Mus musculus multiplexed sample of adrenal gland, gastrocnemius, heart, hypothalamus, left cerebral cortex, left hippocampal formation, pituitary gland
Protocols
Attribution
Ali Mortazavi, UCI

Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tar
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
168 MB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) heart tissue; Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue; ... and 12 more samples

Donors

11 items
Aliases
  • ali-mortazavi:057_WSBJ_10M
male
Mus musculus
  • ali-mortazavi:058_WSBJ_10F
female
Mus musculus
  • ali-mortazavi:046_NZOJ_10F
female
Mus musculus
  • ali-mortazavi:076_PWKJ_10F
female
Mus musculus
  • ali-mortazavi:029_AJ_10M
male
Mus musculus
  • ali-mortazavi:016_B6J_10F
female
Mus musculus
  • ali-mortazavi:031_AJ_10M
male
Mus musculus
  • ali-mortazavi:062_WSBJ_10F
female
Mus musculus
  • ali-mortazavi:122_B6J_10F
female
Mus musculus
  • ali-mortazavi:022_B6J_10F
female
Mus musculus

MeasurementSet Input File Sets

1 item
Measurement Sets
Measured Samples
Parse SPLiT-seq
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) heart tissue; Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue; ... and 12 more samples

File Sets Using This Analysis Set as an Input

5 items
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:founder_heart_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:founder_diencephalonpituitary_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:founder_cortexhippocampus_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:founder_adrenal_analysis
Ali Mortazavi, UCI
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:founder_gastrocnemius_analysis
Ali Mortazavi, UCI

Documents

1 item
Page
Description
Type
Download
Preview
UCI/Caltech IGVF dataset pipeline report for igvf_012_Subpool_2
plate map