{
"@context": "/terms/",
"@id": "/analysis-sets/IGVFDS0021NCLH/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0021NCLH",
"aliases": [
"richard-sherwood:18loci_ABE_LDLuptake_bean_analysis_set"
],
"assay_titles": [
"CRISPR FACS screen"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6216RCYU](/in-vitro-systems/IGVFSM6216RCYU/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6216RCYU/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6216RCYU](/in-vitro-systems/IGVFSM6216RCYU/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6216RCYU/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM8157SSTV](/in-vitro-systems/IGVFSM8157SSTV/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM8157SSTV/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM8157SSTV](/in-vitro-systems/IGVFSM8157SSTV/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM8157SSTV/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM7036PBYG](/in-vitro-systems/IGVFSM7036PBYG/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7036PBYG/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM7036PBYG](/in-vitro-systems/IGVFSM7036PBYG/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7036PBYG/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2673GFKF](/in-vitro-systems/IGVFSM2673GFKF/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2673GFKF/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2673GFKF](/in-vitro-systems/IGVFSM2673GFKF/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2673GFKF/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3663WDFF](/in-vitro-systems/IGVFSM3663WDFF/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3663WDFF/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3663WDFF](/in-vitro-systems/IGVFSM3663WDFF/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3663WDFF/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3624LDJK](/in-vitro-systems/IGVFSM3624LDJK/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3624LDJK/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3624LDJK](/in-vitro-systems/IGVFSM3624LDJK/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3624LDJK/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI5972QBNS](/tabular-files/IGVFFI5972QBNS/) has in progress subobject document [9de85372-949c-491a-8cc4-b23900ea951b](/documents/9de85372-949c-491a-8cc4-b23900ea951b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI5972QBNS/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2152OUKV](/in-vitro-systems/IGVFSM2152OUKV/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2152OUKV/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2152OUKV](/in-vitro-systems/IGVFSM2152OUKV/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2152OUKV/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3582GWYM](/in-vitro-systems/IGVFSM3582GWYM/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3582GWYM/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3582GWYM](/in-vitro-systems/IGVFSM3582GWYM/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3582GWYM/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3657JJTM](/in-vitro-systems/IGVFSM3657JJTM/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3657JJTM/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3657JJTM](/in-vitro-systems/IGVFSM3657JJTM/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3657JJTM/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5236JKXQ](/in-vitro-systems/IGVFSM5236JKXQ/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5236JKXQ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5236JKXQ](/in-vitro-systems/IGVFSM5236JKXQ/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5236JKXQ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM9186YAGZ](/in-vitro-systems/IGVFSM9186YAGZ/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9186YAGZ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM9186YAGZ](/in-vitro-systems/IGVFSM9186YAGZ/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9186YAGZ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM9172BOGO](/in-vitro-systems/IGVFSM9172BOGO/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9172BOGO/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM9172BOGO](/in-vitro-systems/IGVFSM9172BOGO/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9172BOGO/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI3704JQMI](/tabular-files/IGVFFI3704JQMI/) has in progress subobject document [4f54d1b4-b9e7-40e8-976b-7bba3e0f0817](/documents/4f54d1b4-b9e7-40e8-976b-7bba3e0f0817/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI3704JQMI/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI4848LLAJ](/tabular-files/IGVFFI4848LLAJ/) has in progress subobject document [a6158bee-0440-4764-8e34-d1e618ffde11](/documents/a6158bee-0440-4764-8e34-d1e618ffde11/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI4848LLAJ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2094QGWS](/in-vitro-systems/IGVFSM2094QGWS/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2094QGWS/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2094QGWS](/in-vitro-systems/IGVFSM2094QGWS/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2094QGWS/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6863YJUL](/in-vitro-systems/IGVFSM6863YJUL/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6863YJUL/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6863YJUL](/in-vitro-systems/IGVFSM6863YJUL/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6863YJUL/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM4480HBZE](/in-vitro-systems/IGVFSM4480HBZE/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM4480HBZE/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM4480HBZE](/in-vitro-systems/IGVFSM4480HBZE/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM4480HBZE/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5253OWUJ](/in-vitro-systems/IGVFSM5253OWUJ/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5253OWUJ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5253OWUJ](/in-vitro-systems/IGVFSM5253OWUJ/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5253OWUJ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM9896ADOJ](/in-vitro-systems/IGVFSM9896ADOJ/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9896ADOJ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM9896ADOJ](/in-vitro-systems/IGVFSM9896ADOJ/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9896ADOJ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5703OIDJ](/in-vitro-systems/IGVFSM5703OIDJ/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5703OIDJ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5703OIDJ](/in-vitro-systems/IGVFSM5703OIDJ/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5703OIDJ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM1124PLAC](/in-vitro-systems/IGVFSM1124PLAC/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1124PLAC/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM1124PLAC](/in-vitro-systems/IGVFSM1124PLAC/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1124PLAC/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0239RDRJ](/in-vitro-systems/IGVFSM0239RDRJ/) has in progress subobject crispr modification [464b468a-3a69-4880-96b1-3a5efa246118](/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0239RDRJ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0239RDRJ](/in-vitro-systems/IGVFSM0239RDRJ/) has in progress subobject construct library set [IGVFDS5242VHWM](/construct-library-sets/IGVFDS5242VHWM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0239RDRJ/"
}
]
},
"award": {
"@id": "/awards/HG012010/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/3439b15d-c35b-4991-a77d-8feb104d3642/",
"title": "Luca Pinello"
},
"title": "Comprehensive characterization of variants underlying heart and blood diseases with CRISPR base editing"
},
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS5242VHWM/",
"accession": "IGVFDS5242VHWM",
"file_set_type": "guide library",
"integrated_content_files": [
{
"@id": "/tabular-files/IGVFFI4591THXG/",
"accession": "IGVFFI4591THXG",
"content_type": "guide RNA sequences",
"status": "in progress",
"summary": "GRCh38 guide RNA sequences"
},
{
"@id": "/tabular-files/IGVFFI6659OUII/",
"accession": "IGVFFI6659OUII",
"content_type": "variants",
"status": "in progress",
"summary": "GRCh38 variants"
}
],
"status": "in progress",
"summary": "guide (sgRNA) library targeting phenotype-associated variants genome-wide"
}
],
"control_for": [],
"creation_timestamp": "2024-11-20T20:56:12.496023+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO2837BRET/",
"accession": "IGVFDO2837BRET",
"aliases": [
"igvf:donor_of_HepG2"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"file_set_type": "principal analysis",
"files": [
{
"@id": "/tabular-files/IGVFFI3704JQMI/",
"accession": "IGVFFI3704JQMI",
"aliases": [
"richard-sherwood:18loci_ABE_LDLuptake_bean_variant_scores"
],
"content_type": "variant effects",
"controlled_access": false,
"creation_timestamp": "2024-11-20T20:56:39.450795+00:00",
"file_format": "csv",
"file_size": 128360,
"href": "/tabular-files/IGVFFI3704JQMI/@@download/IGVFFI3704JQMI.csv.gz",
"s3_uri": "s3://igvf-files/2024/11/20/78943efb-d884-42bc-83d4-c20a9ff63830/IGVFFI3704JQMI.csv.gz",
"status": "released",
"submitted_file_name": "18loci_uptake_bean_element_result.csv.gz",
"upload_status": "validated"
},
{
"@id": "/tabular-files/IGVFFI5972QBNS/",
"accession": "IGVFFI5972QBNS",
"aliases": [
"richard-sherwood:18loci_ABE_LDLuptake_bean_mapped_counts"
],
"content_type": "guide quantifications",
"controlled_access": false,
"creation_timestamp": "2024-11-20T20:56:19.140706+00:00",
"file_format": "csv",
"file_size": 335951,
"href": "/tabular-files/IGVFFI5972QBNS/@@download/IGVFFI5972QBNS.csv.gz",
"s3_uri": "s3://igvf-files/2024/11/20/e24bd647-93d4-4201-bfdf-9da2399cfc64/IGVFFI5972QBNS.csv.gz",
"status": "released",
"submitted_file_name": "18loci_uptake_bean_mapped_count.csv.gz",
"upload_status": "validated"
},
{
"@id": "/tabular-files/IGVFFI4848LLAJ/",
"accession": "IGVFFI4848LLAJ",
"aliases": [
"richard-sherwood:18loci_ABE_LDLuptake_bean_guide_scores"
],
"content_type": "guide quantifications",
"controlled_access": false,
"creation_timestamp": "2024-11-20T20:56:30.832270+00:00",
"file_format": "csv",
"file_size": 185305,
"href": "/tabular-files/IGVFFI4848LLAJ/@@download/IGVFFI4848LLAJ.csv.gz",
"s3_uri": "s3://igvf-files/2024/11/20/b7d10336-0b8a-4824-bffb-4cad3b56adb1/IGVFFI4848LLAJ.csv.gz",
"status": "released",
"submitted_file_name": "18loci_uptake_bean_sgRNA_result.csv.gz",
"upload_status": "validated"
}
],
"functional_assay_mechanisms": [],
"input_file_sets": [
{
"@id": "/measurement-sets/IGVFDS5442FZSA/",
"accession": "IGVFDS5442FZSA",
"aliases": [
"richard-sherwood:18loci_uptake_Rep1_top20_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS6636PQMX/",
"accession": "IGVFDS6636PQMX",
"aliases": [
"richard-sherwood:18loci_uptake_Rep1_top40_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS6464SOVZ/",
"accession": "IGVFDS6464SOVZ",
"aliases": [
"richard-sherwood:18loci_uptake_Rep1_bottom20_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS2884DTLZ/",
"accession": "IGVFDS2884DTLZ",
"aliases": [
"richard-sherwood:18loci_uptake_Rep1_bottom40_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS5856FVYJ/",
"accession": "IGVFDS5856FVYJ",
"aliases": [
"richard-sherwood:18loci_uptake_Rep2_top20_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS1445OKMY/",
"accession": "IGVFDS1445OKMY",
"aliases": [
"richard-sherwood:18loci_uptake_Rep2_top40_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS8455NAPR/",
"accession": "IGVFDS8455NAPR",
"aliases": [
"richard-sherwood:18loci_uptake_Rep2_bottom20_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS3623JPJT/",
"accession": "IGVFDS3623JPJT",
"aliases": [
"richard-sherwood:18loci_uptake_Rep2_bottom40_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS2333QYKL/",
"accession": "IGVFDS2333QYKL",
"aliases": [
"richard-sherwood:18loci_uptake_Rep3_top20_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS9030KZWL/",
"accession": "IGVFDS9030KZWL",
"aliases": [
"richard-sherwood:18loci_uptake_Rep3_top40_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS4552QTII/",
"accession": "IGVFDS4552QTII",
"aliases": [
"richard-sherwood:18loci_uptake_Rep3_bottom20_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS7237TBXX/",
"accession": "IGVFDS7237TBXX",
"aliases": [
"richard-sherwood:18loci_uptake_Rep3_bottom40_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS7718HEXQ/",
"accession": "IGVFDS7718HEXQ",
"aliases": [
"richard-sherwood:18loci_uptake_Rep4_top20_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS2124SNCK/",
"accession": "IGVFDS2124SNCK",
"aliases": [
"richard-sherwood:18loci_uptake_Rep4_top40_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS0737ROIQ/",
"accession": "IGVFDS0737ROIQ",
"aliases": [
"richard-sherwood:18loci_uptake_Rep4_bottom20_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS4235CEEA/",
"accession": "IGVFDS4235CEEA",
"aliases": [
"richard-sherwood:18loci_uptake_Rep4_bottom40_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS7513KJPR/",
"accession": "IGVFDS7513KJPR",
"aliases": [
"richard-sherwood:B1.1_18loci_Rep1_bulk_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS3068SPQU/",
"accession": "IGVFDS3068SPQU",
"aliases": [
"richard-sherwood:B2.1_18loci_Rep2_bulk_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS4638GTKE/",
"accession": "IGVFDS4638GTKE",
"aliases": [
"richard-sherwood:B3.1_18loci_Rep3_bulk_ms"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS8056EBUX/",
"accession": "IGVFDS8056EBUX",
"aliases": [
"richard-sherwood:B4.2_18loci_Rep4_bulk_ms"
],
"file_set_type": "experimental data",
"status": "released"
}
],
"input_for": [],
"lab": {
"@id": "/labs/richard-sherwood/",
"title": "Richard Sherwood, Brigham and Women's Hospital"
},
"protocols": [
"https://www.protocols.io/view/18-loci-variant-installation-protocol-abe-ldluptak-eq2ly638egx9/v1"
],
"release_timestamp": "2025-03-07T22:25:31.328266+00:00",
"sample_summary": "HepG2 cell line, modified with CRISPR modifications, transfected with a guide library, sorted into bins",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM5236JKXQ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5236JKXQ",
"aliases": [
"richard-sherwood:18loci_uptake_Rep4_top40_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Top 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6216RCYU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6216RCYU",
"aliases": [
"richard-sherwood:18loci_uptake_Rep2_bottom40_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Bottom 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8157SSTV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8157SSTV",
"aliases": [
"richard-sherwood:18loci_uptake_Rep3_top20_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Top 20% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7036PBYG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7036PBYG",
"aliases": [
"richard-sherwood:B1.1_18loci_Rep1_bulk_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9186YAGZ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9186YAGZ",
"aliases": [
"richard-sherwood:18loci_uptake_Rep1_bottom40_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Bottom 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2673GFKF/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2673GFKF",
"aliases": [
"richard-sherwood:18loci_uptake_Rep3_bottom20_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Bottom 20% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9172BOGO/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9172BOGO",
"aliases": [
"richard-sherwood:B4.2_18loci_Rep4_bulk_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3663WDFF/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3663WDFF",
"aliases": [
"richard-sherwood:18loci_uptake_Rep2_top40_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Top 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2094QGWS/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2094QGWS",
"aliases": [
"richard-sherwood:18loci_uptake_Rep2_top20_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Top 20% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6863YJUL/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6863YJUL",
"aliases": [
"richard-sherwood:18loci_uptake_Rep4_bottom20_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Bottom 20% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM4480HBZE/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4480HBZE",
"aliases": [
"richard-sherwood:18loci_uptake_Rep3_top40_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Top 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5253OWUJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5253OWUJ",
"aliases": [
"richard-sherwood:18loci_uptake_Rep2_bottom20_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Bottom 20% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9896ADOJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9896ADOJ",
"aliases": [
"richard-sherwood:18loci_uptake_Rep4_top20_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Top 20% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3624LDJK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3624LDJK",
"aliases": [
"richard-sherwood:B3.1_18loci_Rep3_bulk_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5703OIDJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5703OIDJ",
"aliases": [
"richard-sherwood:18loci_uptake_Rep1_top20_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Top 20% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2152OUKV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2152OUKV",
"aliases": [
"richard-sherwood:18loci_uptake_Rep4_bottom40_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Bottom 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3582GWYM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3582GWYM",
"aliases": [
"richard-sherwood:B2.1_18loci_Rep2_bulk_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3657JJTM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3657JJTM",
"aliases": [
"richard-sherwood:18loci_uptake_Rep1_top40_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Top 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1124PLAC/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1124PLAC",
"aliases": [
"richard-sherwood:18loci_uptake_Rep3_bottom40_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Bottom 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0239RDRJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0239RDRJ",
"aliases": [
"richard-sherwood:18loci_uptake_Rep1_bottom20_ivs"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/464b468a-3a69-4880-96b1-3a5efa246118/",
"modality": "base editing",
"status": "in progress"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HepG2"
],
"status": "released",
"summary": "HepG2",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Bottom 20% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)",
"taxa": "Homo sapiens"
}
],
"schema_version": "9",
"status": "released",
"submitted_by": {
"@id": "/users/96fd4846-bfa6-47db-ac12-495df29943ee/",
"title": "Eric Che"
},
"submitted_files_timestamp": "2024-11-20T20:56:19.140706+00:00",
"summary": "CRISPR base editing FACS screen: guide quantifications, variant effects",
"uuid": "c7e2cbac-21d0-4374-bbef-5a847d7b5736",
"workflows": [
{
"@id": "/workflows/IGVFWF8641DTYD/",
"accession": "IGVFWF8641DTYD",
"name": "BEAN CRISPR screen workflow",
"status": "released",
"uniform_pipeline": false
}
]
}