{
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"WARNING": [
{
"category": "missing age",
"detail": "Primary cell [IGVFSM9627TJZO](/primary-cells/IGVFSM9627TJZO/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
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"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM9627TJZO/"
},
{
"category": "missing age",
"detail": "Primary cell [IGVFSM7117ATUZ](/primary-cells/IGVFSM7117ATUZ/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM7117ATUZ/"
},
{
"category": "missing age",
"detail": "Primary cell [IGVFSM0829UPAR](/primary-cells/IGVFSM0829UPAR/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM0829UPAR/"
}
]
},
"award": {
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"component": "functional characterization",
"contact_pi": {
"@id": "/users/5d329c0e-3ea9-49bf-9bb9-844a53a882c0/",
"title": "Charles Gersbach"
},
"title": "High-Throughput Functional Annotation of Gene Regulatory Elements and Variants Critical to Complex Cellular Phenotypes"
},
"control_for": [],
"creation_timestamp": "2024-09-20T15:06:35.671880+00:00",
"donors": [
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],
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"taxa": "Homo sapiens"
},
{
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],
"sex": "unspecified",
"status": "released",
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},
{
"@id": "/human-donors/IGVFDO8565PQXZ/",
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
}
],
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{
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"aliases": [
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"upload_status": "validated"
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{
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],
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"file_format": "bam",
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"s3_uri": "s3://igvf-files/2024/10/14/3857b2c1-8d47-4ffb-9bbe-57c2e119decc/IGVFFI2326YYLB.bam",
"submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8.rnaseq.pSM73.gata3.d2.star2.Aligned.out.sorted.bam",
"upload_status": "validated"
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{
"@id": "/alignment-files/IGVFFI1367OMNJ/",
"accession": "IGVFFI1367OMNJ",
"aliases": [
"charles-gersbach:cd8-tcells-rna-seq-cas-ko-gata3-bam-rep3"
],
"assembly": "GRCh38",
"content_type": "transcriptome alignments",
"creation_timestamp": "2024-10-14T21:05:32.204551+00:00",
"file_format": "bam",
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"s3_uri": "s3://igvf-files/2024/10/14/5ffa16e5-0693-4944-812e-6187971cf5f8/IGVFFI1367OMNJ.bam",
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"upload_status": "validated"
}
],
"functional_assay_mechanisms": [],
"input_file_sets": [
{
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"accession": "IGVFDS0870PAHS",
"aliases": [
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],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/IGVFDS0416TFEL/",
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"aliases": [
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],
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{
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"aliases": [
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}
],
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],
"lab": {
"@id": "/labs/charles-gersbach/",
"title": "Charles Gersbach, Duke"
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"protocols": [
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"https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6"
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"publications": [
{
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],
"release_timestamp": "2024-10-25T04:18:36.308591+00:00",
"sample_summary": "CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library",
"samples": [
{
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"@type": [
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"Item"
],
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"modality": "knockout"
}
],
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{
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}
],
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"taxa": "Homo sapiens"
},
{
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"Sample",
"Item"
],
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],
"modifications": [
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"modality": "knockout"
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],
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{
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],
"status": "released",
"summary": "CD8-positive, alpha-beta memory T cell",
"term_name": "CD8-positive, alpha-beta memory T cell"
}
],
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"summary": "CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)",
"taxa": "Homo sapiens"
},
{
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"Item"
],
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"Item"
],
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"summary": "CD8-positive, alpha-beta memory T cell",
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}
],
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"summary": "CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)",
"taxa": "Homo sapiens"
}
],
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"status": "released",
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"title": "Alejandro Barrera"
},
"submitted_files_timestamp": "2024-10-14T21:03:11.973311+00:00",
"summary": "knockout RNA-seq: transcriptome alignments",
"uuid": "c10bcb2b-b7a3-47a2-b515-617df0549089",
"workflows": [
{
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}
]
}