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IGVFFI9954EGHG

released
validated
File Set
IGVFDS8415FVDT(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
GRCm39 unfiltered alignments
Analysis Step Version
/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/
File Format
bam
Content Type
alignments
Content Summary
unfiltered alignments
Aliases
buenrostro-bernstein:IGVFDS8415FVDT_bam
md5sum
a8ed84a47847935d376da7f6db91f3df
Content MD5sum
60c17fc0b602dbc0a26d7c9df23ec746
File Size
3.1 GB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/a6d4a8e2-651e-421f-ae34-bfdf4cf1f42e/single_cell_pipeline/a509d7e4-f8d8-444a-b4e7-d1e6cb892d9f/call-atac/wf_atac/cb5d328e-fa06-4aea-8cea-4abecf547577/call-generate_bam/SS-PKR-129.bam
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Alignment Details

Reference Files
Genome Assembly
GRCm39

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files This File Derives From

18 items
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
fastq
reads
Jason Buenrostro, Broad
1.2 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.2 GB
validated
fastq
reads
Jason Buenrostro, Broad
641 MB
validated
fastq
reads
Jason Buenrostro, Broad
411 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
bai
index
index of IGVFFI9954EGHG
Jason Buenrostro, Broad
2.2 MB
validated