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IGVFFI8239JDGA

released
validated
File Set
IGVFDS5833SGWM(SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants)
Summary
custom assembly unfiltered alignments
Analysis Step Version
/analysis-step-versions/13a525ab-87f3-4e73-a405-0f7a41c043de/
File Format
bam
Content Type
alignments
Content Summary
unfiltered alignments
Aliases
tim-reddy:starr-seq-rna-bam-personal-genome-P013
md5sum
276c42b678c9c30d8caa68b20f315640
Content MD5sum
04a6f7841c25191ee0d6197c10e723d6
File Size
9.8 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.rna.pool13.personal_genome.sorted.bam
Checkfiles Version
v14
Attribution
Tim Reddy, Duke

Alignment Details

Reference Files
Genome Assembly
custom

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

2 items
fastq
reads
Tim Reddy, Duke
11 GB
validated
fastq
reads
Tim Reddy, Duke
9.2 GB
validated

Files Derived From This File

2 items
bai
index
index of IGVFFI8239JDGA
Tim Reddy, Duke
3.4 MB
validated
tsv
reporter variants
GRCh38 reporter variants
Bill Majoros, Duke
37 MB
validation exempted