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IGVFFI8085KQXE

released
validated
File Set
IGVFDS6846CJYR(SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants)
Summary
custom assembly unfiltered alignments
Analysis Step Version
/analysis-step-versions/13a525ab-87f3-4e73-a405-0f7a41c043de/
File Format
bam
Content Type
alignments
Content Summary
unfiltered alignments
Aliases
tim-reddy:starr-seq-rna-bam-personal-genome-P020
md5sum
c2219a7b96407fd15c6d518033a1cbe9
Content MD5sum
8ef3512d2de51537e3f544331f0fdc5e
File Size
9.7 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.rna.pool20.personal_genome.sorted.bam
Checkfiles Version
v14
Attribution
Tim Reddy, Duke

Alignment Details

Reference Files
Genome Assembly
custom

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

2 items
fastq
reads
Tim Reddy, Duke
12 GB
validated
fastq
reads
Tim Reddy, Duke
9.8 GB
validated

Files Derived From This File

2 items
bai
index
index of IGVFFI8085KQXE
Tim Reddy, Duke
3.2 MB
validated
tsv
reporter variants
GRCh38 reporter variants
Bill Majoros, Duke
47 MB
validation exempted