IGVFFI7291IHIZ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/alignment-files/IGVFFI7291IHIZ/",
4    "@type": [
5        "AlignmentFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI7291IHIZ",
10    "aliases": [
11        "maya-kasowski:sample_4463_WGS_bam"
12    ],
13    "assay_titles": [
14        "WGS"
15    ],
16    "assembly": "GRCh38",
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG012076/",
20        "component": "mapping"
21    },
22    "checkfiles_version": "v17",
23    "content_md5sum": "2196a198353eafdcfbe929692cecf017",
24    "content_summary": "unfiltered alignments",
25    "content_type": "alignments",
26    "controlled_access": true,
27    "creation_timestamp": "2025-03-06T18:29:41.342182+00:00",
28    "file_format": "bam",
29    "file_set": {
30        "@id": "/measurement-sets/IGVFDS8567EXVI/",
31        "@type": [
32            "MeasurementSet",
33            "FileSet",
34            "Item"
35        ],
36        "accession": "IGVFDS8567EXVI",
37        "assay_term": {
38            "@id": "/assay-terms/OBI_0002117/",
39            "term_name": "whole genome sequencing assay"
40        },
41        "file_set_type": "experimental data",
42        "samples": [
43            {
44                "@id": "/primary-cells/IGVFSM4986COEO/",
45                "@type": [
46                    "PrimaryCell",
47                    "Biosample",
48                    "Sample",
49                    "Item"
50                ],
51                "accession": "IGVFSM4986COEO",
52                "classifications": [
53                    "primary cell"
54                ],
55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/UBERON_0002371/",
58                        "status": "released",
59                        "term_name": "bone marrow"
60                    }
61                ],
62                "status": "released",
63                "summary": "Homo sapiens (female) bone marrow cell",
64                "taxa": "Homo sapiens"
65            }
66        ],
67        "status": "released",
68        "summary": "WGS"
69    },
70    "file_size": 87782251662,
71    "filtered": false,
72    "gene_list_for": [],
73    "href": "/alignment-files/IGVFFI7291IHIZ/@@download/IGVFFI7291IHIZ.bam",
74    "input_file_for": [],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/maya-kasowski/",
78        "title": "Maya Kasowski, Stanford"
79    },
80    "loci_list_for": [],
81    "md5sum": "6c26079ef772ef4f0c211e074a2737f7",
82    "quality_metrics": [],
83    "read_count": 1209190676,
84    "redacted": false,
85    "reference_files": [
86        "/reference-files/IGVFFI0653VCGH/"
87    ],
88    "release_timestamp": "2025-03-26T19:36:39.184993+00:00",
89    "s3_uri": "s3://igvf-restricted-files/2025/03/06/f065bd79-de16-4530-94c4-10268d591982/IGVFFI7291IHIZ.bam",
90    "schema_version": "14",
91    "status": "released",
92    "submitted_by": {
93        "@id": "/users/2bebcf9d-414f-4058-8d97-00020741a419/",
94        "title": "Shouvik Mani"
95    },
96    "submitted_file_name": "/users/shouvikm/data/WGS/4463_KASWGS22/G23-2979_e97b83a1-aebd-4791-80fd-b93aaa932a3a_23H-297MP0048_2023-11-05T06:44:46.262Z.bam",
97    "summary": "GRCh38 unfiltered alignments",
98    "upload_status": "validated",
99    "uuid": "f065bd79-de16-4530-94c4-10268d591982"
100}