{
"@context": "/terms/",
"@id": "/alignment-files/IGVFFI6011PSTB/",
"@type": [
"AlignmentFile",
"File",
"Item"
],
"accession": "IGVFFI6011PSTB",
"aliases": [
"maya-kasowski:sample_4146_WGS_bam"
],
"assay_titles": [
"WGS"
],
"assembly": "GRCh38",
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v17",
"content_md5sum": "984e06fb21b48d214ca70eeeced627b5",
"content_summary": "unfiltered alignments",
"content_type": "alignments",
"controlled_access": true,
"creation_timestamp": "2025-03-06T16:12:09.160417+00:00",
"file_format": "bam",
"file_set": {
"@id": "/measurement-sets/IGVFDS9324VMFR/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9324VMFR",
"assay_term": {
"@id": "/assay-terms/OBI_0002117/",
"term_name": "whole genome sequencing assay"
},
"file_set_type": "experimental data",
"samples": [
{
"@id": "/primary-cells/IGVFSM2560VILO/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2560VILO",
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"status": "released",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "Homo sapiens (female) bone marrow cell",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "WGS"
},
"file_size": 82764400638,
"filtered": false,
"gene_list_for": [],
"href": "/alignment-files/IGVFFI6011PSTB/@@download/IGVFFI6011PSTB.bam",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/maya-kasowski/",
"title": "Maya Kasowski, Stanford"
},
"loci_list_for": [],
"md5sum": "f88bfe2e094429def80893163158e58e",
"quality_metrics": [],
"read_count": 1228800211,
"redacted": false,
"reference_files": [
"/reference-files/IGVFFI0653VCGH/"
],
"release_timestamp": "2025-03-26T19:36:47.175349+00:00",
"s3_uri": "s3://igvf-restricted-files/2025/03/06/04d37578-30f2-4cd4-bb7e-d9bda467fa06/IGVFFI6011PSTB.bam",
"schema_version": "14",
"status": "released",
"submitted_by": {
"@id": "/users/2bebcf9d-414f-4058-8d97-00020741a419/",
"title": "Shouvik Mani"
},
"submitted_file_name": "/users/shouvikm/data/WGS/4146_KASWGS19/G24-3504_8b11808c-496e-44d0-8fce-e89b69d3dffe_24H-067MP0091_2024-04-01T03:16:01.579Z.bam",
"summary": "GRCh38 unfiltered alignments",
"upload_status": "validated",
"uuid": "04d37578-30f2-4cd4-bb7e-d9bda467fa06"
}