IGVFFI5792IIDK

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/alignment-files/IGVFFI5792IIDK/",
4    "@type": [
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9    "accession": "IGVFFI5792IIDK",
10    "aliases": [
11        "maya-kasowski:sample_4238_WGS_bam"
12    ],
13    "assay_titles": [
14        "WGS"
15    ],
16    "assembly": "GRCh38",
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG012076/",
20        "component": "mapping"
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22    "checkfiles_version": "v17",
23    "content_md5sum": "072394ab6db3541ca2dfae5ac084c8a7",
24    "content_summary": "unfiltered alignments",
25    "content_type": "alignments",
26    "controlled_access": true,
27    "creation_timestamp": "2025-03-06T12:59:31.150904+00:00",
28    "file_format": "bam",
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37        "assay_term": {
38            "@id": "/assay-terms/OBI_0002117/",
39            "term_name": "whole genome sequencing assay"
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41        "file_set_type": "experimental data",
42        "samples": [
43            {
44                "@id": "/primary-cells/IGVFSM5209OUZF/",
45                "@type": [
46                    "PrimaryCell",
47                    "Biosample",
48                    "Sample",
49                    "Item"
50                ],
51                "accession": "IGVFSM5209OUZF",
52                "classifications": [
53                    "primary cell"
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55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/UBERON_0002371/",
58                        "status": "released",
59                        "term_name": "bone marrow"
60                    }
61                ],
62                "status": "released",
63                "summary": "Homo sapiens (male) bone marrow cell",
64                "taxa": "Homo sapiens"
65            }
66        ],
67        "status": "released",
68        "summary": "WGS"
69    },
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71    "filtered": false,
72    "gene_list_for": [],
73    "href": "/alignment-files/IGVFFI5792IIDK/@@download/IGVFFI5792IIDK.bam",
74    "input_file_for": [],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/maya-kasowski/",
78        "title": "Maya Kasowski, Stanford"
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80    "loci_list_for": [],
81    "md5sum": "1e91ee326c7d0379b5df376e84580fee",
82    "quality_metrics": [],
83    "read_count": 1497360002,
84    "redacted": false,
85    "reference_files": [
86        "/reference-files/IGVFFI0653VCGH/"
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88    "release_timestamp": "2025-03-26T19:36:52.682099+00:00",
89    "s3_uri": "s3://igvf-restricted-files/2025/03/06/d2f24b31-3561-46dc-91a9-530f429b04d5/IGVFFI5792IIDK.bam",
90    "schema_version": "14",
91    "status": "released",
92    "submitted_by": {
93        "@id": "/users/2bebcf9d-414f-4058-8d97-00020741a419/",
94        "title": "Shouvik Mani"
95    },
96    "submitted_file_name": "/users/shouvikm/data/WGS/4238_KASWGS11/G24-3495_b72da940-e54b-4790-8614-969695f0631a_24H-067MP0069_2024-04-01T03:52:11.868Z.bam",
97    "summary": "GRCh38 unfiltered alignments",
98    "upload_status": "validated",
99    "uuid": "d2f24b31-3561-46dc-91a9-530f429b04d5"
100}