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INDEXED
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AlignmentFile
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IGVFFI5684XZYN
IGVFFI5684XZYN
released
validated
Json view
File Set
IGVFDS3609QWUZ
(ATAC-seq: alignments)
Summary
GRCh38 filtered alignments
Analysis Step Version
/analysis-step-versions/c95d766a-a900-4694-8065-e12651f618ba/
File Format
bam
Content Type
alignments
Content Summary
filtered alignments
Aliases
charles-gersbach:cd8-tcells-atac-seq-chronic-activation-gfp-bam-rep2
md5sum
d10e333a6b8824cfd68aac6fe4a44f0a
Content MD5sum
99db3b74b343f84cddcc539965b5f46c
File Size
1.6 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/SCM-C69-rep2.masked.dups_marked.bam
Alignment Details
Reference Files
IGVFFI0653VCGH
Filtered
True
Samples
2 items
Accession
Type
Sample Terms
Summary
IGVFSM3805WZUU
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
IGVFSM6508DFUL
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
Files This File Derives From
2 items
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
IGVFFI3933VDYQ
IGVFDS9111EVGC
fastq
reads
Charles Gersbach, Duke
1.3 GB
validated
IGVFFI4881HBSI
IGVFDS9111EVGC
fastq
reads
Charles Gersbach, Duke
1.3 GB
validated
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4762WUEH
tsv
peak quantifications
GRCh38 peak quantifications
Charles Gersbach, Duke
2.2 MB
validated
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke