IGVFFI4927HZXQ

released

validated

File Set

IGVFDS5106XTZH(CRISPR knockout FACS screen targeting IL7R: alignments, fold change over control, guide quantifications)

Summary

custom assembly unfiltered alignments

Analysis Step Version

/analysis-step-versions/f9f6ae88-d515-4e49-9902-deea3cf87703/

File Format

bam

Content Type

alignments

Content Summary

unfiltered alignments

Aliases

charles-gersbach:cd8-tcells-alignment-crispr-ko-tfome-high-bin-rep2

md5sum

8fff6e6f635c108c3e41063ea8a6454f

Content MD5sum

15b800df8e319bfa73f2e85418a61a19

File Size

552 MB

Submitted File Name

/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/pSM73_H3_S6.sorted.bam

Checkfiles Version

Legacy version of checkfiles

Alignment Details

Reference Files

IGVFFI0626PVXM

Genome Assembly

custom

Samples

4 items

Sample Terms

Summary

IGVFSM0466RHGQ

PrimaryCell

CD8-positive, alpha-beta memory T cell

CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 90-100% expression of IL7R) modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM2624KTRK

PrimaryCell

CD8-positive, alpha-beta memory T cell

CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 0-10% expression of IL7R) modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM4936HKEW

PrimaryCell

CD8-positive, alpha-beta memory T cell

CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 0-10% expression of IL7R) modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM7226CVDS

PrimaryCell

CD8-positive, alpha-beta memory T cell